| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1687 |
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| Symbol | |
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| ID | 3671269 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1776147 |
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| End bp | 1778501 |
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| Gene Length | 2355 bp |
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| Protein Length | 784 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637710376 |
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| Product | putative type IV secretory pathway VirD4 components |
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| Protein accession | YP_315445 |
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| Protein GI | 74317705 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3505] Type IV secretory pathway, VirD4 components |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00283538 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.176159 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGGCC AGGCGACCCG CAAAAGCAAT CAGCCCACCG GCGCCGATCG CTGGGGCGCG
CCGCTCTTTC TGGGCGGCCT GGCTGGTGCG CTGGCCGCTG CCGGCCTTTA CCTGGGCGGC
TGGGGGTGGG TATTACAGTC TCAGGGCTTG GGCTTCCACG TCGAACCCGC GCTGCATCAT
CTTCTTCCCG GTCGGCAGCT GGGAGATCGC CTGCACGACA AGACCGTGGC CTTCATGCAG
GCCGAGCACC CCGCTGCCCT GAAAGCCCTT GAAGTCGGGC CGCAGATCGC CGGCCTGCTG
GCGGGTGGGC TTGTGTTTTG GATGGTGTAC GGCGATGTCG TCATTGCGAC CCAGGACCGC
CATATCCGAG GCCGGCGGCG CCTTAAAGGA GCGGCGGCAC TTGCAGCGTG GGTGAAGGAC
GAAGGGGAGG CGGCGGACGG ATTGCGTATC CATCCCAAGC TGCCCCCCAT CTCGAAATCC
CGCGAGACCC GCCACATCCT GATCGTCGGC GGCGTCGGCA GCGGCAAAAC ACAGACGCTG
CTTCCTTTGA TGCGCGCCGC GCGCGAGCGG GGCGACAGGG CGATTATTTT TGACTTCAAG
GGTGACTTCA CCCCCGATTT TCCGTCATGC ACCGCGCGGC ACAAGGGACG TGCGATCGAG
GTTGAGGACG TGATTTTCGC ACCATGGGAT AGCCGATCCA CGCTTTGGGC TGTTGCGCGT
GATGTGGACA CCTTGTCTGC CGCGCGCGAG TTCGCCGCGC GCATGATCGT CGAGCCCGGC
GGGGGTAGCG GCTCGCCCAT GTGGGCAAAC GCCGCGCGGC AGGTGCTGGT CGCTTGCCTC
GTCGAGTTGC AATCAACCAA GCCAGGCGAC TGGGGTTTTG CCGACCTGGT TGCGGGACTC
ACTCGCCCGG TTGACCAGTT GACCGAAGCG GCCAGACGCT ACTTCCCCGA GGCAGTGAAA
GCGCTCGGCG ACGGCCAGCA GAACGTCACG ACAGCCGGCA TTCAGATCAA TCTGATGTCT
TACCTCGCGG TCATCTTTGA CTTGGCGCGA GCTTGGCCTG GGCCTGGGAT TTTTAGCATT
CGTGAATGGC TCACCGAGGT TGGGGCGCGG CGCGTAAAAA CCGTGATCCT CCAGCACGAC
GGGCGCTTCG AGACCCTTGC CCGCGCTTTC AACAGTGCCG TACTTGGGCT CGCCGGCCAG
TTGATCAAGT CCAACTTGGT TCGTGATTCG AAGGAAAGAA AACTTTGGTT ATTCCTGGAT
GAGTTCCCTG AGTTGGGGAA GGTGGAAACG GTCCTCTCGC TTGCCGCGGT CGGACGTAGC
AAGGGAATAC GAGTGGTACT CGGTTTACAG GACATCAGCC AGGTTAAAAA GATCTATTCC
GAGCACGATA CAAACTCAAT TGTCTCGATG GTTGGCACCC AGGTTATCGC TCAAGTCTCC
CCGGGGGAGA CGGCCAAGTA CATCGCGGAA AATCTGATCG GCGATCGCGA CCTAGAGCGG
CTTGGCGTGT CTATAACCAG CGGTGCAGGA CGCGCTCCCG GAATTTTCAC GTCTGGTGGC
AATCGCACAT CGAAATGGGA GGATAAGCGC GAGCTGGTGG TGTTGCCCAG CGAACTCTTG
CAGCTTGGCC CTGATCTTGA TTTGGGCGGC GTCAAAGTGT GGATGTCGGG GATTGGCGAG
GACGTGCTTG AAGTCCTGAT TCCGTTTTCC GATCCCAACC ATTTTCGTCC GTCCAGCGTG
ATCGCTGACT GGACGCGCTA CCCGAATCAG CCGATTGCGC CTGCTGTTGC CACCCCTGCG
CAGGAACCAT CTCAGCCCGT GCCCTCATGG GCTGAAGAAG CAGCAGAGGC AGACGTCGCG
CCGTTACTAG TAACGCCAAC TTCACCAGCA GTAACGCCAG TCGCGAATCC CTGGGCGGAC
GACATCGACG GCGACGAAGC CGGCGAAGGC GAAGAGTCTG CGCCTGCTCC CGAGACCACG
ACCGCCACCG ATCCGCTGGC CTTCCTTGAC GACGGCGAGT CCACAGAAAA AACGGCAGCC
GCTGAGTTCG AAACCCGCAT GCTGCCCATT GCCACCCCAC TGTCCAGCCA ACTGGCCGAC
CAGGCCAAGG AAGAAGCGAC GGAAAGCATT GCGGGCGAGC TCGCTCAACA AGTCGGCATC
GCAGCGCTGC CATCAGGCAT CGCCGAAATC GCCCACGCCG TGGAAATCGC GGACACGCTC
CTCGACCTTG GCGCCAGCGC CGCCATGCCG CCGACCGAGG TATTACCAGT AACGGAGGCC
GGGGTTCAGC CTCCACGAAA GAAAAAAATC CGCCTAAAGA AATCCGCCAC AGCCCAGCTT
GAGGAGAGTA TCTGA
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| Protein sequence | MTGQATRKSN QPTGADRWGA PLFLGGLAGA LAAAGLYLGG WGWVLQSQGL GFHVEPALHH
LLPGRQLGDR LHDKTVAFMQ AEHPAALKAL EVGPQIAGLL AGGLVFWMVY GDVVIATQDR
HIRGRRRLKG AAALAAWVKD EGEAADGLRI HPKLPPISKS RETRHILIVG GVGSGKTQTL
LPLMRAARER GDRAIIFDFK GDFTPDFPSC TARHKGRAIE VEDVIFAPWD SRSTLWAVAR
DVDTLSAARE FAARMIVEPG GGSGSPMWAN AARQVLVACL VELQSTKPGD WGFADLVAGL
TRPVDQLTEA ARRYFPEAVK ALGDGQQNVT TAGIQINLMS YLAVIFDLAR AWPGPGIFSI
REWLTEVGAR RVKTVILQHD GRFETLARAF NSAVLGLAGQ LIKSNLVRDS KERKLWLFLD
EFPELGKVET VLSLAAVGRS KGIRVVLGLQ DISQVKKIYS EHDTNSIVSM VGTQVIAQVS
PGETAKYIAE NLIGDRDLER LGVSITSGAG RAPGIFTSGG NRTSKWEDKR ELVVLPSELL
QLGPDLDLGG VKVWMSGIGE DVLEVLIPFS DPNHFRPSSV IADWTRYPNQ PIAPAVATPA
QEPSQPVPSW AEEAAEADVA PLLVTPTSPA VTPVANPWAD DIDGDEAGEG EESAPAPETT
TATDPLAFLD DGESTEKTAA AEFETRMLPI ATPLSSQLAD QAKEEATESI AGELAQQVGI
AALPSGIAEI AHAVEIADTL LDLGASAAMP PTEVLPVTEA GVQPPRKKKI RLKKSATAQL
EESI
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