| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1600 |
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| Symbol | fliF |
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| ID | 3672985 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 1685101 |
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| End bp | 1686747 |
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| Gene Length | 1647 bp |
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| Protein Length | 548 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637710287 |
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| Product | flagellar MS-ring protein |
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| Protein accession | YP_315358 |
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| Protein GI | 74317618 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1766] Flagellar biosynthesis/type III secretory pathway lipoprotein |
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| TIGRFAM ID | [TIGR00206] flagellar basal-body M-ring protein/flagellar hook-basal body protein (fliF) |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.320993 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGGTAG CAGGTGAAAT GGTGGTTCCG GGCAACGTCA TGGAATTTAC CCGCACGGCC
GGCGGGCGAA AAATCCTGTT GATGCTCGGC GTCGCCGCGT CGGTCGCGGT GATGGCTGCG
GTCTGGATGT GGGGCCAGCA GCCCGAGTAT CGCGTGCTGT TCTCCAACTT CAGCGACCGC
GACGGCGGCG CGATCGTCGC CGAGCTGGAA AAAATGAACG TCCCCTACAA ATACGCCGAA
GGCGGCGGCG CGGTGCTGGT GCCGGCCGAC CGCGTGCACG ACGCGCGTCT GAAGCTCGCC
TCGCAAGGCC TGCCCAAGGG CGGCAACGTC GGGTTCGAGC TGATGGAGAA CCAACGGCTC
GGCGCCTCGC AATTCGTCGA ACAGGTCAAT TTCCAGCGCG CGATGGAAGG CGAACTCGCA
CGATCGATCG AATCGGTCTC GGCCGTGCAG GCCGCGCGCG TGCACCTCGC CCTGCCCAAG
GACTCGATTT TCGTTTCCGA GCAGAAACAG CCGACCGCCT CCGTACTGCT CAATCTTCAC
CCCGGCCGCG CCCTCGATCC GCAGCAGGTC AGCGCGATCG TTCACCTGGT TGCGAGCAGC
GTGCCCGAAC TCGCGACCAA GAACGTCACC GTCGTCGACC AGAACGGCAA TCTGCTGTCC
GACGCCGGCA AGGCCCCGCG CGTCAACGGC ATGGATCCGA GCCAGATCAA ATACGTGCAA
GAGCTGCAGC AGGACGTCGT CCAGCGCATC GAATCGATCA TCACGCCGAT CGTCGGCCCC
GGCAACGTGC GCGCCGAAGC GACCGCGGAC GTCGATTTTT CGCGCAGCGA GCAGGCCGTC
GAATCGTACA AGCCGAACCA GACCCCCGAC GCGATGGCGA TCCGCAGCCA GCAGACGAGC
GAATCGCTCA ATGGCTCGGC GAACCCCGCC GGCGTACCCG GCGCGCTGAT CAATCAGCCG
CCTGCGCCCG CGACCGCACC GATCACAGTG CCCGGCCAGG CGACGCCGGC ACCCGCGGCG
GCGGCGGCGC AGCCTGCGAC GAGCACGCGC AAGGACGCGA CGGTCAATTA CGAAGTCGAC
AAGACGATCC AGTACGTCCA GCAGGCGGGC GGCGGCCTCA AGCGGCTGTC GGTCGGGGTC
GTCGTCAACT ACAAGAAGAC CGTCGACAAG GCCGGCAAGG TCGCCATGAA GCCCTTGAGC
GAAGCCGAGA AAACCCAGAT CACGAATCTG GTCAAGGAAG CGATGGGCTA CAACCAGGCG
CGCGGCGACA CCGTCAACGT CGTCAACAGC CCCTTTGCCA GCGCCCAGGA GGAAGACCTC
CCCCAACCGC CGTTCTGGAA GCAGCCGGAG TACGCCGAAT ACTTCGACAT CGCACGCAAC
GTGGGCAAGT ACCTGCTGAT GGGCATCGCG CTGCTCCTGC TCTACCTGAA AGTGGCCAAG
CCCCTGCTGA AGAAGATGTC CGAGCAGCAG GCGTTGGCCG CGCCCAACCA CCCCCTGCAC
CTGGAGCAAC TCGCGACCGA CGAGCGCGCC GCCCTTCCCG GCCAGCGCAA CTACCAGGAG
AACCTGTCGC GCGCGCAGAG GCTCGCCAAC GAGGACCCGC GCGTCGTCGC CAACATCGTG
AAGACCTGGG TCGCCAACAA TGACTGA
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| Protein sequence | MAVAGEMVVP GNVMEFTRTA GGRKILLMLG VAASVAVMAA VWMWGQQPEY RVLFSNFSDR
DGGAIVAELE KMNVPYKYAE GGGAVLVPAD RVHDARLKLA SQGLPKGGNV GFELMENQRL
GASQFVEQVN FQRAMEGELA RSIESVSAVQ AARVHLALPK DSIFVSEQKQ PTASVLLNLH
PGRALDPQQV SAIVHLVASS VPELATKNVT VVDQNGNLLS DAGKAPRVNG MDPSQIKYVQ
ELQQDVVQRI ESIITPIVGP GNVRAEATAD VDFSRSEQAV ESYKPNQTPD AMAIRSQQTS
ESLNGSANPA GVPGALINQP PAPATAPITV PGQATPAPAA AAAQPATSTR KDATVNYEVD
KTIQYVQQAG GGLKRLSVGV VVNYKKTVDK AGKVAMKPLS EAEKTQITNL VKEAMGYNQA
RGDTVNVVNS PFASAQEEDL PQPPFWKQPE YAEYFDIARN VGKYLLMGIA LLLLYLKVAK
PLLKKMSEQQ ALAAPNHPLH LEQLATDERA ALPGQRNYQE NLSRAQRLAN EDPRVVANIV
KTWVANND
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