| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1563 |
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| Symbol | |
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| ID | 3672043 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1644823 |
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| End bp | 1645791 |
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| Gene Length | 969 bp |
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| Protein Length | 322 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 637710249 |
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| Product | ribosomal large subunit pseudouridine synthase C |
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| Protein accession | YP_315321 |
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| Protein GI | 74317581 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
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| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.151804 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAAAGA ATGACTTAGA GAAAGATTCG GTCCGGCGTC TGAAGATTGA CGAGGGCGCC
GACGACCAGC GACTCGACAA TTATCTGATG GCGCGCCTCA AAGGCGTTCC CAAAAGCCGC
ATCTACAAGC TCGTGCGCGG CGGCGAGGTG CGGATCAACG GCGGGCGCGT CGACGTCGGC
TACCGCCTCA AGGTCGGCGA CGAGGTGCGG ATTCCGCCGG TGCGGATGGC CGCGCCGGTG
ATCACGCCGG CGACGCACCT GCCGCAGGGC GGGCTGCGCC TGTTGCCGCT GATCCTCTAT
CGCGACGACG CCCTGATCGC GTTGAACAAG CCTGCGGGCA TGGCCGTCCA CGGCGGCAGC
GGCATTTCGC GCGGCGTCAT CGAGCAGCTA CGTCTCGAGC TGCCGGAATG CCGCTACATG
GAGCTCGTCC ATCGGCTCGA CCGCGAAACC TCGGGCGTGC TGCTCGTCGC GCTCAAGCGT
CGCGCGCTCG TTGGGCTGCA CGCGGCCATG CGCGACGGCA AGATCGAAAA ACGCTACCTC
ACGCTGGTCG CCGGGCGCTG GCCCAATCCG CTTCAGCACG TGAAGCTGCC GCTGCACAAA
CGCGTCACCG AGGAAGGCGA GAAGCGCGTG ACCGTGCGCG ACACCGGCCA GACCGCGCAC
ACGATCTTCC GCCGCCTGCG GGGCTACGCC GAGTTCACAC TGCTCGAAGC GGAATTGAAA
ACCGGCCGCA CCCATCAGAT TCGCGTGCAT ACCTCGCACC TCGGTTTTCC GATCGCCGGA
GACGACAAAT ACGGCGATTT CGAACTCAAC AAGCGGTTGG CGAAGCGCGG ACTCAAGCGC
ATGTTCCTGC ACGCCGCCAA GCTCGCGTTC GCCCACCCGA TCTCGGGCGA GCGCATGACG
ATCGAGGCGC CTTTACCCGC CGACCTTGCG ACCTTTCTGG ACACGCTCGA CCATGCCCAA
GCAATTTGA
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| Protein sequence | MKKNDLEKDS VRRLKIDEGA DDQRLDNYLM ARLKGVPKSR IYKLVRGGEV RINGGRVDVG
YRLKVGDEVR IPPVRMAAPV ITPATHLPQG GLRLLPLILY RDDALIALNK PAGMAVHGGS
GISRGVIEQL RLELPECRYM ELVHRLDRET SGVLLVALKR RALVGLHAAM RDGKIEKRYL
TLVAGRWPNP LQHVKLPLHK RVTEEGEKRV TVRDTGQTAH TIFRRLRGYA EFTLLEAELK
TGRTHQIRVH TSHLGFPIAG DDKYGDFELN KRLAKRGLKR MFLHAAKLAF AHPISGERMT
IEAPLPADLA TFLDTLDHAQ AI
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