| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1456 |
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| Symbol | |
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| ID | 3673569 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 1539712 |
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| End bp | 1543350 |
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| Gene Length | 3639 bp |
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| Protein Length | 1212 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637710141 |
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| Product | diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_315214 |
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| Protein GI | 74317474 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.4231 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGACGAATC TTCCGATCTC GACTCGACTG CTGTTGAGCT ACCTCCTCGT CGCCGTGCTG
CCGCTTGCCG GCCTCGCGGC GTTCTATCTC GCCTCGTTCG AGGCCTCGCT GACGCAAACC
GTGCTCGCGA ACATGGCGAG CGTCGCCGAC AAGAAAGCCG CGCAGATCGA CAGCTACCTG
CGCGAGCGCT CGGAGGACGT CGCCCAGCTC GCCCTGCGCC CCGCGGTCCG CAACGGGTTG
CTCGAACTCA CGCGCGCGTT TCGCGCGGGC GGCCCCGCTG CGCCGGCCTA TCTCGACGCC
ACGCTTCAAC TGCGGCGGGC GCTCGAAGAT GGCGGAGCCG CGTCGGGTTT CTACGACCTG
CTGCTGGTCG ACGCCGAAGG CAACGTGCTG TTCACGCTCA AGCGCGAGCC CGACCTGCTC
TCGAATTTGC GCCACGGCCC CTACCGCGAC ACCGAACTCG CAGCGGGATA CGCGCGCGCG
ATGCGGAGCG GCAAGCCGCT GCTCACGCGC TTTGCGCCCT ACGCGCCATC CGACAACCGC
CCGACGGCGT TTTACGTGAC GCCCCTGCGC ATCGACGGCG AGGTCCACGG CGCGCTCGCC
TTGCAGCTCG ACGTGCAGCG CCTCATGACG GTCACGGTCG ACCGCATCGG CCTCGGACGC
ACTGGCGAAA CGGTTCTGGC GCAACGCGAC GGGGACGAGG CGTATTACAC CGGCCCGCTG
CGCCACGTGC GTGACGCCGC CTACCGCTAT CGCGTGCCGC TCAAGCAGGG GGCTGCCCCG
ATGATCGCGG CGCTCGCCGG CAGGAATGGC GACGGGGTCG TGCGCGACTA CGCCGGGATC
GAGACGGTCG CGGCGTGGCG TCATCTTCCG GCCCTGGACT GGGGCATGGT CGTGAAAATC
GACGCCGACG AGGCGCTCGC GCCCGCGCAC CATTTGCGCC AGCTGACCTA CGTGGCGCTC
GCGCTGTTTC TACTGCTCTC GGCTGCAACC GCCTTTTTGC TCGGCCGCCG CTTCGCCCGC
CCGATTCGCG CGATGACGCG CGTCGCGGAC CAGATCGCCG CCGGCGATCT GCGTCAGCGC
GTGCCGCAGG ACGGAGGCGA CGAACTCGGA CGTCTGGCCG CTGCATTCAA TCGCATGGCC
GACACGCTGG CGGCGTCCTA TGACAACCTC GAAGCCGAGG TGGAAAAACG CTCGCGCGAA
TTGCGCGAAC TTTCCGCGCT GCAGGGCGCG ATCCTCGAGC ACGCGGGGGC GCTGGTCGTG
GTCCTCGACC GCGAGGGCCG CATCCGCCGC TTCAACCGTG CGTGCGAGGC TTTGACGCAG
TATTCGTTTT CCGAGGTCGA AGGCCGCCAG GTATGGGATT TCATCCCGCC CGAGGAACGA
CGGATCGTGC AGGACGAGGC GTTTGCGGTC CTCTTCAACG ATCCGGAGCA GTCCCGGAGC
ACGCTCACCA ATCACTGGGT CGCGCGCGAC GGAGGTCGCC GTCTGATCGA ATGGTCCAAT
TCCGTGTTGC ACGACGCGCA GGGCAAAGTC GAATTCGTCG TCGCCGTGGG CAACGACGTC
ACCGATAAAA TGCGGGCCGA AGCCGCGCTC AAGGAAAGCG AGAGCCGGCT CAAAGAGGCG
CAGCGTATCG CCCAGGTCGG CAGCTGGGCG CTCGATCTCG TCACGGGTAA ATTGATCTGG
TCGGACGAGA TGTTTCGCAT TTTCGAAACC GACGAGGCGG CGTTCGGCCA GTCGTACGAG
GCCTTCCTCG ATGCACTCCA TCCGGAAGAC CGGGAGCACG TGAACAAGGC CTACATGCAT
TCGGTCACCA ACCACACGCC CTATGACCTC GTCCACCGGC TTCTTCTGCC GGACGGCCGG
GTCAAATGGC TGCATGGGCG CGGCGAGACA CGCTACGGCA AGAACGGCGA TCCGATCGCT
TCCTGCGGTA CCGTGCAGGA CATCACGGCC CGCAAGAAGC AGGAAGACGC GCTGCGGCTC
TACGCGAGCA TTTTCGAGCA CAGCGGCGAA GCGATCCTGA TCGCCGACCA GGCGCGCCAC
ATCATCGCGG TGAACCCTGC GTTCACCAAC CTGACGGGCT ATGCGCTCGA CGACATCCGC
GGCGAGGAAC CGACCATTCT TGCCGGGGGG CAAGCGTCCG AAGAGAGCTA TCGCAGCACC
TGGGCGTCGC TCGAGCAAAC TGGCTATTGG CAGGGCGAAA TCATCGACCG CCGCAAGGAC
GGGACGCTCT ATCCGAAGTG GATGGCGGTA TCGGTCGTGC GCGATGCGGA CGGCGTCCTC
ACCCATTACG TCGCGAGTTT CACCGACATC ACCGAGCGCA AGCTCGCAGA GGCACAGATC
AAACATCTCG CCTATCACGA CCCGCTCACC GGGCTCAGCA ACCGCTTCAG CCTTCAGACG
CAACTCGACC AGACCCTCGC GCTGGCGCGT CGCGAACAGC GCACCCTGGC GGTCGTCTTC
CTCGACCTCG ACCGCTTCAA GTCGATCAAC GATAGCCTCG GTCACGCGCT CGGCGACCAG
TTGCTCGTCG AGGTCGCCCG TCGTCTGCGC GACAACGTAC GCGACAGCGA CATCGTCGCA
CGCCTCGGCG GCGACGAGTT CGTCGTCGTG CTGACCGAAG TGGGCGACGC AGCAGGCGCG
GCGCGCGTGG CCGACAAGCT GCTGGGCGCG CTGGTTCCGC GCTACCGGAT CGGCGGGCAC
GCGCTGCACA CCACCGCGAG CATCGGGATC TCGCTCTATC CGCACGACGG CGACGACGCT
GACGCTTTGA TGAAGAACGC CGATACCGCG ATGTATCACG CCAAATCGCA AGGTCGCGAC
AACGTGCAGT TCTTTACGCC CGAGATGAAT CAGTCGGTGC TCAAACGCCT GCAGTTCGAC
CACGATCTTC GGGTGGCCGT CGAAGCAGGC CAGTTCGAAT TGCATTACCA GCCGCAGATC
AACAGCACGA GCGGCCGGGT CGTGAAGGTC GAAGCGCTGG TTCGCTGGCA GCACCCGCGC
GAGGGCTTGG TGTCGCCGGC AGAATTCATT CCGATCGCCG AGGAGACAGG ACTGATTCTG
CCGCTTGGTG AGTGGGTGCT CAACGAGGCC TGTCGCCAAC TCAGGCTCTG GCGCGACGCG
GGTATCACCG ACCTGACCGT CGCGGTCAAT CTTTCGGCGC ATCAGTTGCA CTCGCCCGCC
CTGATTCCCA TGGTCGCGCG CACACTCGGC AACCACGGAC TCGAGGGCGC CGACCTCTGT
CTCGAAATCA CCGAGTCGGT CGCCATGCGC GACACGACGG CAAGCATCGC GCAACTCCAG
GCGCTGCGCG ACCTCGGCAT TCATCTGTCA ATCGACGACT TCGGCACAGG CTACTCGTCG
TTGAGTTACC TCAAGCTGCT GCCGATAGAC ACGCTGAAAC TCGATCAGTC CTTCGTGTGC
GAGATCGAGT TCAACCCCAG CGACGTCGCG ATCTGTGCGG CGACGATCGC GCTCGCGCAC
AGTCTCGGTC TCGAGGTCGT CGCCGAAGGT ATCGAGACCG AGACCCAGCG CAGGCTGCTC
GCCTCGCATC GCTGCGACTT CATGCAGGGC TATCTGTTCA GCGCGCCGCT GCCGGCAGAG
CGCGCGCTTG CCTACATACG CGAGCAGCAG GCCGCGTGA
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| Protein sequence | MTNLPISTRL LLSYLLVAVL PLAGLAAFYL ASFEASLTQT VLANMASVAD KKAAQIDSYL
RERSEDVAQL ALRPAVRNGL LELTRAFRAG GPAAPAYLDA TLQLRRALED GGAASGFYDL
LLVDAEGNVL FTLKREPDLL SNLRHGPYRD TELAAGYARA MRSGKPLLTR FAPYAPSDNR
PTAFYVTPLR IDGEVHGALA LQLDVQRLMT VTVDRIGLGR TGETVLAQRD GDEAYYTGPL
RHVRDAAYRY RVPLKQGAAP MIAALAGRNG DGVVRDYAGI ETVAAWRHLP ALDWGMVVKI
DADEALAPAH HLRQLTYVAL ALFLLLSAAT AFLLGRRFAR PIRAMTRVAD QIAAGDLRQR
VPQDGGDELG RLAAAFNRMA DTLAASYDNL EAEVEKRSRE LRELSALQGA ILEHAGALVV
VLDREGRIRR FNRACEALTQ YSFSEVEGRQ VWDFIPPEER RIVQDEAFAV LFNDPEQSRS
TLTNHWVARD GGRRLIEWSN SVLHDAQGKV EFVVAVGNDV TDKMRAEAAL KESESRLKEA
QRIAQVGSWA LDLVTGKLIW SDEMFRIFET DEAAFGQSYE AFLDALHPED REHVNKAYMH
SVTNHTPYDL VHRLLLPDGR VKWLHGRGET RYGKNGDPIA SCGTVQDITA RKKQEDALRL
YASIFEHSGE AILIADQARH IIAVNPAFTN LTGYALDDIR GEEPTILAGG QASEESYRST
WASLEQTGYW QGEIIDRRKD GTLYPKWMAV SVVRDADGVL THYVASFTDI TERKLAEAQI
KHLAYHDPLT GLSNRFSLQT QLDQTLALAR REQRTLAVVF LDLDRFKSIN DSLGHALGDQ
LLVEVARRLR DNVRDSDIVA RLGGDEFVVV LTEVGDAAGA ARVADKLLGA LVPRYRIGGH
ALHTTASIGI SLYPHDGDDA DALMKNADTA MYHAKSQGRD NVQFFTPEMN QSVLKRLQFD
HDLRVAVEAG QFELHYQPQI NSTSGRVVKV EALVRWQHPR EGLVSPAEFI PIAEETGLIL
PLGEWVLNEA CRQLRLWRDA GITDLTVAVN LSAHQLHSPA LIPMVARTLG NHGLEGADLC
LEITESVAMR DTTASIAQLQ ALRDLGIHLS IDDFGTGYSS LSYLKLLPID TLKLDQSFVC
EIEFNPSDVA ICAATIALAH SLGLEVVAEG IETETQRRLL ASHRCDFMQG YLFSAPLPAE
RALAYIREQQ AA
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