Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_1415 |
Symbol | |
ID | 3673389 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | - |
Start bp | 1502245 |
End bp | 1503807 |
Gene Length | 1563 bp |
Protein Length | 520 aa |
Translation table | 11 |
GC content | 71% |
IMG OID | 637710100 |
Product | RND efflux system outer membrane lipoprotein NodT |
Protein accession | YP_315173 |
Protein GI | 74317433 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGCGGTC GTGAAGGGCA GCCGCGCAGA CGCTATACAA TTTCGAGGCT TACTTTCGAA CCATCGGGCA GCTCCTTGAA TAAGCAGCCA TTTCGCACCG ACGGCCGACG CCGCGAGACG ATGAAGACGC GGTCTTTCGT CGCGCCCGCG CTGTTCGCGT TCGTCGTGCT GGCGCTCACG GGCTGCGTCA CGGTCGGCCC CGGTCACGTC GCGCCCGAGC CTTCGCTTCC CGCGCACTGG GCGACACCCG ACGCGCAGCC GCACGCGGGA TACGTCGCCC GGCAATCCGA TCTCGGTCAG TGGTGGCGCA GCCTCGGCGA TCCGCTCCTT GTCACGCTGG TCGACGAGGC GTTGCGCACC GGGCCCGATG TCCGCAGTGC AGAGGCGCGC CTGCGTGCTG CGCGCGCACG CCGCGCCGTC GCCGGGGCCG ACCGCTTTCC GAGCGTGAAC GCATCGGGCA GCGCCCGCCA CAGCGACTCG AACGCGCAGG TCGGCAGCGG CTCGATGCAG GATCTCTACA GCGTCGGCTT CGATGCCTCG TGGGAACTCG ATGTCTTCGG CCGCGTGCGC CGCAGCGTCG AGGCGGCAGG TGCCGACCAT GAATCGTCGC AGGCCGAGCT TGCGAACGCG CGCGTCTCGC TCGCCGCCGA GGTGGCGCTG ACCTACGTCG AAGTGCGCGT GTTGCAGATC CGCCTCGGCA TCGCGCGCGC CAATCTCGCG AGCCAGACCG AAACGCTGCA GTTGACCGAC TGGCGCGCGC AGGCGGGGCT CGTCAGCAGC CAGGATTCGG AGCAGGCGCG CGCCAACCTT GAGCAGACGC GGGCGCAGAT TCCGAGCCTC GAAACGAGTC TCGCCGAGGC GGCGTACCGG CTCGATCTGC TGCTCGGCGT GCCGCCCGGC ACGCTCACGC CGCGCCTCGC AACAGGCGGC GAACTGCCGG CGCTTCCCGC GGAGGTCGCC GTCGGCATCC CTGCCGACAC GCTGCGCCAG CGACCCGACG TGCGCGCCGC CGAGCGGATG CTGGCGGCAG AAACCGCGCG CGTCGGCGTC GCCCAGGCGG CACGCTTTCC GTCGTTCAGT CTTTCGGGCT CGATCGGCCT CGAGGCGCTG ACGCTCGGCG GGCTGAGCGA CAGCGGCGCG ACGCGTTCGC TGCTCGCCGG GATTACCGCG CCGATCTTCG ACGCCGGGCG CTTGCGCGCG CAGGTCGACG TTCAGGACGC CGTGCGGGAA CAGGCGCGGG TCGCGTACGA GCGCACGGTG CTGACGGCGT TGCAGGAGGT CGAAAGCGCG CTGGTCGCGC TCGCGCGCAA CCGCGAACGC AGCGAGGCGC TGGCCAAGGG CGCGGCCGCG GCGCGCAACG CGGCGGATTT CGCGCGGCAG CGCTACAGCA CCGGACTGAT CGATTTCCAG TCGGTGCTCG ACACGGAACG CAGCGTGCTC GCGCTCGAAG ACAGCCTCGC GAGCACCCGC GCGGACGGCG TTCTGGCGCT GATCCGGCTA TACAAGGCAC TCGGCGGCGG ATGGTCGCCG GCCGCATCCG CTTCGCAAGA GGGCCCCGCA TGA
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Protein sequence | MRGREGQPRR RYTISRLTFE PSGSSLNKQP FRTDGRRRET MKTRSFVAPA LFAFVVLALT GCVTVGPGHV APEPSLPAHW ATPDAQPHAG YVARQSDLGQ WWRSLGDPLL VTLVDEALRT GPDVRSAEAR LRAARARRAV AGADRFPSVN ASGSARHSDS NAQVGSGSMQ DLYSVGFDAS WELDVFGRVR RSVEAAGADH ESSQAELANA RVSLAAEVAL TYVEVRVLQI RLGIARANLA SQTETLQLTD WRAQAGLVSS QDSEQARANL EQTRAQIPSL ETSLAEAAYR LDLLLGVPPG TLTPRLATGG ELPALPAEVA VGIPADTLRQ RPDVRAAERM LAAETARVGV AQAARFPSFS LSGSIGLEAL TLGGLSDSGA TRSLLAGITA PIFDAGRLRA QVDVQDAVRE QARVAYERTV LTALQEVESA LVALARNRER SEALAKGAAA ARNAADFARQ RYSTGLIDFQ SVLDTERSVL ALEDSLASTR ADGVLALIRL YKALGGGWSP AASASQEGPA
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