Gene Tbd_1415 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_1415 
Symbol 
ID3673389 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp1502245 
End bp1503807 
Gene Length1563 bp 
Protein Length520 aa 
Translation table11 
GC content71% 
IMG OID637710100 
ProductRND efflux system outer membrane lipoprotein NodT 
Protein accessionYP_315173 
Protein GI74317433 
COG category[M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG1538] Outer membrane protein 
TIGRFAM ID[TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCGCGGTC GTGAAGGGCA GCCGCGCAGA CGCTATACAA TTTCGAGGCT TACTTTCGAA 
CCATCGGGCA GCTCCTTGAA TAAGCAGCCA TTTCGCACCG ACGGCCGACG CCGCGAGACG
ATGAAGACGC GGTCTTTCGT CGCGCCCGCG CTGTTCGCGT TCGTCGTGCT GGCGCTCACG
GGCTGCGTCA CGGTCGGCCC CGGTCACGTC GCGCCCGAGC CTTCGCTTCC CGCGCACTGG
GCGACACCCG ACGCGCAGCC GCACGCGGGA TACGTCGCCC GGCAATCCGA TCTCGGTCAG
TGGTGGCGCA GCCTCGGCGA TCCGCTCCTT GTCACGCTGG TCGACGAGGC GTTGCGCACC
GGGCCCGATG TCCGCAGTGC AGAGGCGCGC CTGCGTGCTG CGCGCGCACG CCGCGCCGTC
GCCGGGGCCG ACCGCTTTCC GAGCGTGAAC GCATCGGGCA GCGCCCGCCA CAGCGACTCG
AACGCGCAGG TCGGCAGCGG CTCGATGCAG GATCTCTACA GCGTCGGCTT CGATGCCTCG
TGGGAACTCG ATGTCTTCGG CCGCGTGCGC CGCAGCGTCG AGGCGGCAGG TGCCGACCAT
GAATCGTCGC AGGCCGAGCT TGCGAACGCG CGCGTCTCGC TCGCCGCCGA GGTGGCGCTG
ACCTACGTCG AAGTGCGCGT GTTGCAGATC CGCCTCGGCA TCGCGCGCGC CAATCTCGCG
AGCCAGACCG AAACGCTGCA GTTGACCGAC TGGCGCGCGC AGGCGGGGCT CGTCAGCAGC
CAGGATTCGG AGCAGGCGCG CGCCAACCTT GAGCAGACGC GGGCGCAGAT TCCGAGCCTC
GAAACGAGTC TCGCCGAGGC GGCGTACCGG CTCGATCTGC TGCTCGGCGT GCCGCCCGGC
ACGCTCACGC CGCGCCTCGC AACAGGCGGC GAACTGCCGG CGCTTCCCGC GGAGGTCGCC
GTCGGCATCC CTGCCGACAC GCTGCGCCAG CGACCCGACG TGCGCGCCGC CGAGCGGATG
CTGGCGGCAG AAACCGCGCG CGTCGGCGTC GCCCAGGCGG CACGCTTTCC GTCGTTCAGT
CTTTCGGGCT CGATCGGCCT CGAGGCGCTG ACGCTCGGCG GGCTGAGCGA CAGCGGCGCG
ACGCGTTCGC TGCTCGCCGG GATTACCGCG CCGATCTTCG ACGCCGGGCG CTTGCGCGCG
CAGGTCGACG TTCAGGACGC CGTGCGGGAA CAGGCGCGGG TCGCGTACGA GCGCACGGTG
CTGACGGCGT TGCAGGAGGT CGAAAGCGCG CTGGTCGCGC TCGCGCGCAA CCGCGAACGC
AGCGAGGCGC TGGCCAAGGG CGCGGCCGCG GCGCGCAACG CGGCGGATTT CGCGCGGCAG
CGCTACAGCA CCGGACTGAT CGATTTCCAG TCGGTGCTCG ACACGGAACG CAGCGTGCTC
GCGCTCGAAG ACAGCCTCGC GAGCACCCGC GCGGACGGCG TTCTGGCGCT GATCCGGCTA
TACAAGGCAC TCGGCGGCGG ATGGTCGCCG GCCGCATCCG CTTCGCAAGA GGGCCCCGCA
TGA
 
Protein sequence
MRGREGQPRR RYTISRLTFE PSGSSLNKQP FRTDGRRRET MKTRSFVAPA LFAFVVLALT 
GCVTVGPGHV APEPSLPAHW ATPDAQPHAG YVARQSDLGQ WWRSLGDPLL VTLVDEALRT
GPDVRSAEAR LRAARARRAV AGADRFPSVN ASGSARHSDS NAQVGSGSMQ DLYSVGFDAS
WELDVFGRVR RSVEAAGADH ESSQAELANA RVSLAAEVAL TYVEVRVLQI RLGIARANLA
SQTETLQLTD WRAQAGLVSS QDSEQARANL EQTRAQIPSL ETSLAEAAYR LDLLLGVPPG
TLTPRLATGG ELPALPAEVA VGIPADTLRQ RPDVRAAERM LAAETARVGV AQAARFPSFS
LSGSIGLEAL TLGGLSDSGA TRSLLAGITA PIFDAGRLRA QVDVQDAVRE QARVAYERTV
LTALQEVESA LVALARNRER SEALAKGAAA ARNAADFARQ RYSTGLIDFQ SVLDTERSVL
ALEDSLASTR ADGVLALIRL YKALGGGWSP AASASQEGPA