| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1411 |
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| Symbol | |
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| ID | 3672512 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 1496699 |
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| End bp | 1498669 |
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| Gene Length | 1971 bp |
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| Protein Length | 656 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637710096 |
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| Product | diguanylate cyclase |
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| Protein accession | YP_315169 |
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| Protein GI | 74317429 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCCACG ACGTTCACCG GGGGGGACTT CTCGACCATC AGGCGCTGGC GTGGGTCGTG
CTCGCCGTTG CGCTGCTGTT CACGTTCGCG ACCTGGCAGC ATTTCGACGC CGCGCGTGCC
CACCACGATC AGGACCGTTT CATGCGCGCC GCGGAAAAGC AGCGGAACAT CCTGACCAAT
CGCATCCACG ACTACGAGCA GGTTCTGCGT GGCGGGGCCG CACTGTTTGC GGCAGGTGGC
GTGCCCAGCC GCAGCGAGTG GCGGACCTAT GTCGACGAGC TCGACCTCGA GCGCTCGCTG
CCAGGCATTC TGGCGACCGG TTTCGCGCTC ATGGTGCCGC CCGAAGCCAA GGCGGCGCAC
GAGCAGTCCG TCCGCGCGGA GGGGTTTCCG GATTACGCGA TCGTTCCGCC CGGCGAGCGC
GCCATGCTGA GCAGCATCGT CTACATCGAG CCGTTCAGCG GGCGCAACCT GCGCGCCTTC
GGTTACGACA TGTATTCCGA GCCGACGCGC CGCGAAGCGA TGGACCGCGC GCGCGACAGC
GGCCAGCCCG CGTTGTCGCG CAAGGTCACG CTCGTGCAGG AAACCCGCAC GGGCGTGCAG
CCCGGCTTTC TGATCTACTT CCCTGTTTAC CGCAGCGGCC AGCCGATCGA CACTGTAGCG
GCCCGGCGCG CGGCCCTGCT CGGCTTCGTA TACAGTCCAT TCCGCGCCTA CGATCTGCTC
GACGGGGTGT TTGACACCCC CACCCAAATC CTCGAGATCG AATTGTTCGA CGGCGGCGCA
TCGCCCGAGA ACCTGCTTTA CGCCACCGAA GGCGCGACGC GCGACGCGCG GCTGATGACC
GAGATGAAGC TCGAGGTCGG TGGAAACATC TGGGTCGCGC GCTTCCGCAG CAGCGAACGC
TACGAGTCGC TCGAAGGAAT CATGCAGCCG ACGATGGTCC TCGTCGGCGG GGTCGCGCTC
GACTTTCTGT TGTTTTCCGT GCTCTACATG AATGCCCGCC ACCGGCGCAA GATGCGGATT
TCAGCGGCCA AGCTCGCTCA AAGCCTCGAC AGCTACAAGG CGCTCGTCGA AAACATCCCG
GGCGCGGTGT TCCGCTGCGA GGTCGGATCG CCCGCACCGC TGAGACGGCT GAGCAGCGGC
ATTGCGCCGC TGACCGGCGA GGCGTCGGAG CGTTTCCTTT CTGGAGACGT GTCCTACCAG
GAACTGATCC ATCCCGACGA CCGGGCCGCG GTCGCCGAGG CGGTTGCCGA AGCCGTCGCC
AAGCGAAGCA CCTACAACGT CGAGTACCGG ATCAAGGCCC GCGACGGCTT CACGCGTTGG
GTCAGCGAAC GCGGTCAGGT CAGCTCGGAT GCCGCGGGAC GCGCGCAGTG GCTCGACGGA
GTCGTCCTCG ACATCACCGA ACGCAAGGCC GCCGAGATCA TGATCCGCGA CCTCGCGTTC
AACGACACCC TGACCGGACT GCCCAACCGG CGTCTGCTCC TCGACCGCCT CGAACAGCAG
CTTGCCGCGA GCGGCCGCGC CGGTCGCCAC GGCGCGCTGC TGTTCATCGA CATGGACAAC
TTCAAGACCG TCAACGATAC GCTCGGGCAC GCGGCCGGCG ACCAGGTTCT CGTCGAGGTC
GCGGCGCGCC TGCTTGCGAG CGTCCGGGAA AGCGATACCG TCGCCCGTCT CGGCGGCGAT
GAATTCGTCG TGGTCATCGG CAATCTCGGC AATACCGCCG AGGCGGCCAA GGCCGAAGCC
GCCGAACTCG GTGACAAGAT TCTGCTCAAG CTGTCGCAGC CCTACCGGCT CGGCGCGCAC
CTGCACAACA GCACGCCGAG CATCGGCATC ACGACCTTCT GCGGCCACCA CGTCAGCGCC
GGCCAACTCC TGCGCCGCGC CGATCAGGCG ATGTACCGCG CCAAGTCGGC GGGCCGCCAT
CAGGTCAAGT TCTACGAGGA AGACACCGCG CCCGCTGTGC GCGTCGCCTG A
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| Protein sequence | MTHDVHRGGL LDHQALAWVV LAVALLFTFA TWQHFDAARA HHDQDRFMRA AEKQRNILTN
RIHDYEQVLR GGAALFAAGG VPSRSEWRTY VDELDLERSL PGILATGFAL MVPPEAKAAH
EQSVRAEGFP DYAIVPPGER AMLSSIVYIE PFSGRNLRAF GYDMYSEPTR REAMDRARDS
GQPALSRKVT LVQETRTGVQ PGFLIYFPVY RSGQPIDTVA ARRAALLGFV YSPFRAYDLL
DGVFDTPTQI LEIELFDGGA SPENLLYATE GATRDARLMT EMKLEVGGNI WVARFRSSER
YESLEGIMQP TMVLVGGVAL DFLLFSVLYM NARHRRKMRI SAAKLAQSLD SYKALVENIP
GAVFRCEVGS PAPLRRLSSG IAPLTGEASE RFLSGDVSYQ ELIHPDDRAA VAEAVAEAVA
KRSTYNVEYR IKARDGFTRW VSERGQVSSD AAGRAQWLDG VVLDITERKA AEIMIRDLAF
NDTLTGLPNR RLLLDRLEQQ LAASGRAGRH GALLFIDMDN FKTVNDTLGH AAGDQVLVEV
AARLLASVRE SDTVARLGGD EFVVVIGNLG NTAEAAKAEA AELGDKILLK LSQPYRLGAH
LHNSTPSIGI TTFCGHHVSA GQLLRRADQA MYRAKSAGRH QVKFYEEDTA PAVRVA
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