Gene Tbd_1378 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_1378 
Symbol 
ID3672479 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp1458746 
End bp1459828 
Gene Length1083 bp 
Protein Length360 aa 
Translation table11 
GC content67% 
IMG OID637710063 
ProductNi-Fe hydrogenase, small subunit 
Protein accessionYP_315136 
Protein GI74317396 
COG category[C] Energy production and conversion 
COG ID[COG1740] Ni,Fe-hydrogenase I small subunit 
TIGRFAM ID[TIGR00391] hydrogenase (NiFe) small subunit (hydA)
[TIGR01409] Tat (twin-arginine translocation) pathway signal sequence 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.38439 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCAGCAAA GCCCGTTGAT CGACATGCTC GGACGGCAAG GGGTCACGCG CCGCGGCTTT 
CTCAAGTACT GCGCCACGCT GGCTTCGCTG ATGGCCTTGC CGCCCGCGGC GGGCCGGGCG
ATGGCCGAGG CCATCGGCGC CGTCAGGCGG CCGTCGGTGA TCTGGCTGCC GTTCCAGGAA
TGCACCGGTT GCACCGAATC GATCACGCGC TCGCATTCGC CGACCATCGA GGGCCTGATT
TTCGAGGCGA TCTCGCTCGA CTACCAGGAA ACGCTGATGG CCGCCGCAGG GCATCGGGCC
GAGGCCGCGC GCGACGCCGC GATACGCGAC AACTTCGGCA AATATCTGCT CGTCGTCGAC
GGCTCTGTCC CGCTCGGCGC CGAGGGCGCC TATTCGTGCA TCGGCGGGCG CTCCAACGTC
GACATCCTGC GGGAGGCGGC CAAAGGCGCC GCGGCCATCA TCTGCGTCGG CACCTGCTCG
TCGTACGGGG GCATTCCCCA CGCCAACCCG AATCCGACCG GCGCGGTCGC GGTCTCCGAC
GTCATCAAGG ACAAGCCCAT CGTCAACATT CCGGGCTGTC CGCCCATCCC GGTCGTCATG
ACGGGCGTGC TCGCGCATTA CATCGCCTTC GGCAGCCTGC CCGAACTCGA CGCGAAGAAC
CGGCCCAAGG CCTTCTTCGG CGAGACCATC CACGATCGCT GCTATCGCCG GCCTTTCTAC
GACCAGGGCA AATTCGCCAA GACCTTCGAC GACGAGGGCG CGCGCAAGGG CTGGTGCCTG
TTCGAGCTCG GGTGCAAGGG TCCGGTCACC CACAACGCCT GCGCGACCGT CAAATGGAAT
GGCGGCACCT CCTGGCCGGT CGAGTCGGGC CACGGCTGCC TCGGATGTTC CGAGCCCGAC
TTCTGGGACG CCGGCAGCTT CTACAAGGCA TTGTCGCAGC CTTCCGGGCC GCTGAACGTC
GGACTCGCCG CGACAGCTGG CGGGCTCGCG ACCGGCGCCG CCGTCACGGT CGCCAACCGC
GCGAAGAAAA GCGCGGCGCG GGCGTCGCAC AGGACGATCA CGGTCGAGGA TCTGGAGAAA
TGA
 
Protein sequence
MQQSPLIDML GRQGVTRRGF LKYCATLASL MALPPAAGRA MAEAIGAVRR PSVIWLPFQE 
CTGCTESITR SHSPTIEGLI FEAISLDYQE TLMAAAGHRA EAARDAAIRD NFGKYLLVVD
GSVPLGAEGA YSCIGGRSNV DILREAAKGA AAIICVGTCS SYGGIPHANP NPTGAVAVSD
VIKDKPIVNI PGCPPIPVVM TGVLAHYIAF GSLPELDAKN RPKAFFGETI HDRCYRRPFY
DQGKFAKTFD DEGARKGWCL FELGCKGPVT HNACATVKWN GGTSWPVESG HGCLGCSEPD
FWDAGSFYKA LSQPSGPLNV GLAATAGGLA TGAAVTVANR AKKSAARASH RTITVEDLEK