| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1361 |
|---|
| Symbol | |
|---|
| ID | 3672462 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | - |
|---|
| Start bp | 1440704 |
|---|
| End bp | 1441855 |
|---|
| Gene Length | 1152 bp |
|---|
| Protein Length | 383 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637710046 |
|---|
| Product | RND efflux membrane protein |
|---|
| Protein accession | YP_315119 |
|---|
| Protein GI | 74317379 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG0845] Membrane-fusion protein |
|---|
| TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 33 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAACGGC TCCCTGTGCA ACGGCGCACG CTCATGCTCG TCGCCGTGAT CCTTCCGCTG
CTCGCGCTCT TCGTCTACGT CGGGCTGCGC TCGGGGCCGC TAGCACCGGT GCCCGTCGCG
ACCACCACAG TCGAATCGCG GCCGGTCACG CCGGCGCTCT TCGGCATCGG CACGGTCGAG
GCGCGCTACA CGTACAAGAT CGGTCCGACC GTCGCCGGGC GCGTCAAGCG GCTGGACGTG
CACGCGGGAG ATACGGTCCG CGCAGGGCAG GTACTCGGCG AGATGGACCC GGTCGATCTC
GACGATCGCG TCCGCGCCCA GGAAGCGGCT GCCAAGCGCG CACAGGCCAA TCTGCGCGAG
GCCGAAGCGC GGAAGTCCTA TGCCGAGGCC CAGGCGAGCC GCTATCAGCA ACTCTTCACC
GTGCGTTCGA CCAGCGAGGA AATCCTCACC GCCAAGCAGC AGGAGCTGCA GATCGCGGAA
GCCGCGCTGG CGGCGGCGCG GGAAGACATC GCGCGGGCCC GGTCGGACCG CGAAGCGCTA
CTGACACAGC GGCGGAACCT GCGCCTGGTG ACGCCGGTCG GCGGCGTCGT CGCCGTGCGC
GACGCCGACC CCGGCACGAC CGTCGTCGCC GGGCAGGCCG TGATCGAGGT GATCGACCCC
GAGAGCCTGT GGGTCAACGT GCGCTTCGAC CAGATGCGCG CCGCGGGGCT GGCGCGCGGG
CTGCCAGCGC GGATCGTTCT GCGCTCGCGC GACGGCCACA CCCTGAAAGG GCGCGTGCTG
CGCATCGAAC CGATGGCCGA CGCCGTGACC GAGGAGACGC TCGCTAAGGT GACGTTCGAC
ACGCGGCCTG CGCCGCTGCC GCCGGTCGGC GAACTGGCCG AAGTCACGGT GGAACTGCCG
GCTCTTGCGG CGGCGCCGAG CGTGCCCAAC GCCGCGATCC GCCGCGAGGG CGGGCAGGTC
GGCGTGTGGC GGGTCGTGGA CGGCGACCTT CGGTTCACGC CGGTCAAGCT CGGCGCCTCC
GATCTCGACG GCCATGTGCA GGTGCGTGAA GGACTCGAAC CGGGCGACCG CGTCGTGACC
TATAGCGAAA AGGCCTTGAC CGAGCGCAGC CGCGTCAAGG TCGTCGAGCG CATCGCGGGA
ACGTCGAAAT GA
|
|---|
| Protein sequence | MKRLPVQRRT LMLVAVILPL LALFVYVGLR SGPLAPVPVA TTTVESRPVT PALFGIGTVE
ARYTYKIGPT VAGRVKRLDV HAGDTVRAGQ VLGEMDPVDL DDRVRAQEAA AKRAQANLRE
AEARKSYAEA QASRYQQLFT VRSTSEEILT AKQQELQIAE AALAAAREDI ARARSDREAL
LTQRRNLRLV TPVGGVVAVR DADPGTTVVA GQAVIEVIDP ESLWVNVRFD QMRAAGLARG
LPARIVLRSR DGHTLKGRVL RIEPMADAVT EETLAKVTFD TRPAPLPPVG ELAEVTVELP
ALAAAPSVPN AAIRREGGQV GVWRVVDGDL RFTPVKLGAS DLDGHVQVRE GLEPGDRVVT
YSEKALTERS RVKVVERIAG TSK
|
|---|
| |