Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_1289 |
Symbol | |
ID | 3673379 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | + |
Start bp | 1357301 |
End bp | 1360807 |
Gene Length | 3507 bp |
Protein Length | 1168 aa |
Translation table | 11 |
GC content | 68% |
IMG OID | 637709974 |
Product | multi-sensor Signal transduction histidine kinase |
Protein accession | YP_315047 |
Protein GI | 74317307 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4585] Signal transduction histidine kinase |
TIGRFAM ID | [TIGR00229] PAS domain S-box |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 18 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGCGGCCC GCGGCGCTGC CGGCACGTCG GGCGCCGCGC CCGGGTCCGC GCGCACGATC CGACCCGCAG ACGCGCTTTA TCCGGGTGTC TTGTGCTTCA CTAGCGGTAT GAGGTGTCTG CTGCTGGTCC GCTTCGTCAG TTCGTTCTGC CTGCTGCTCG GCGCGGCGGT GCTCTTTTTC GCGCTCGCCG GCGCACCGCG CGACCTTGCC CCGCTTGTCG ACGCGGTGAG CCCGAAGAGT GCGCTCATCA TTGTTTTCGC GGCGCTGACC CTGATCCTCG GCGAACTTGA CGCACGCTGG GCGCGGCGCG TGCGCGTCGG CCTGGGCGCG GGAATCGTCG TGCTCGCCGC ACTCACGCTT GTCCAGCAGG GCCTGCGTCT ATATCCCCAC CTGGCGGCCT GGCCCTGGGC GCTGCTTTTG AGCCTCGACG TGGGGATCCC TGCCGGCGCC GAGACCTTCC GCGCCGTGAA CATGGCGACG ACCGCAGCCC TCGGCTTTGC GCTCTTCGGC GTCGCACTGA TATTGCTCGA GCGGCTCGGA CGCCCCGTGG TGCTGTGGAC CGTTCAGCTG CTGTGCGCGG TCTGCTTCAT GCTCGCGCTG ATGGTCGTCA TGATCCACGT AATGGGCGTG TCCTTCGTGC TCGACGGTGA GGCGCCGGCC GGTCGGGAAG CGGGCTGGCC CGCGGCGGCG GCGCTGCTGC TGTTGAGCGT CGGGCTTTAT TTCGGCGTCA GCCGCCACGC GGAGGCCCGC GCGTACTACG CCCGCTACGA AGACCACAAG ATCATCGGCG TGACGACCTT TCTGCTGCTC GTGACCGCAG TCGGTGCGGG GCTCGCCGGC GCCGGCATCC TCTTGCGCCA GTCCTACGAG GTGTCGCAAC AGACGCTGAA GCAGACTCAG GCAAGCAAGG CCATCCTGTT CCACGACACG CTCATCGCCG CGCAGAACCA GGCCTTGCGC GTCGCGCGGC TGGTGGGCGA ACTCGAGGGC AGCCACCTCC GGTCGCTTTT CCTTGGCCTC AACGATTCGC GCACGGCCAC TGACGGCGCG CAAAAGAACT ACGAACTGGC GGCGCTCGAG ATCATCGAGC CCGACCTCGG CCGGACCGTG GCGCTCGGCG AGATCGGCGG CGAAACGGCT CGCGTCGCGC TGCGCGAACC GGCGAACACC TGGCTCGTGC GGCGCGGCGC CTGGCTGCTC GAAAGCCATA TCCCGATCGC GCGGGCCGGC GGCTTCACGG GCACGCTCGT CACCCACATC CGCCTGCACC GCGTCGAGCA GCTGCTCGAG CAGGCGCGCG GTCTCGGGCA GACCGGCGCG CTGGTCGTCT GCGCGCCGCG CGACGCGACG AGCATGCAAT GCCTGCCTTC CCGGCAAAAC CCGCAGCACG GGCGCGTCAT GCTGCAGCGC GTCGGGCCGC CCTTGCCGAT GGCGCGCGCG CTCGCCGGCG AAGAGGGCAT CGCCGTCGCT TACGACAACT TCGGCGTCAA CGTCATCTCC GCCTACGGGC CGATCGGTTC GACCGGTCTC GGCATGGCAC AAAAAATCGC GACCGCCGAG CTCTACGCGC CGCTGCGTGA ACGCCTTGGC CTGGTCGTCG CCAGCGTGCT CGGGCTCACG CTCGTGGGGG CGGCGCTGCT CTGGCGTCTC GTTCACCCGC TGACCTCCCG GCTGCTCGAG ACCCGGGCGT ATCTGCAGGG GCTGACGAAC AGTGTTCCGG AAGCGGTCAT CACGACCGAC GAAGGCGGTG GGATCAAGAC GTGCAATCCG GCGACGACCG CGCTGTTCGG ATACCTCGAG CCCGAGCTTC AGGCACGGAA AATCGGCGCG CTTTTCGCAC CGACGTCGGC GGTCGCCGAG CGGGCGGACG AACTGATCGA CAGCAGCGGA AGGATGCGCA GCACCGGCAA GGTCGCGCTC GAGCGCCTCG GCAGCCGGAA GGACGGGACG AGCTTCCCGG TCGAACTGAC CGTCACGCCA TTCAACCTCG AGGGCAAACG GCGTTTCGTC GCGGTCGTGC GCGACGTGTC CGCGCGGCAG GCGGCCGAAG AGGCCTTGCA CCGCAGCGAG GAGATGTTCC GCGCGCTGGT CGACAACGCC CCGGACGTCA TCATCCGCAT CGACCGCGGG CACCGTCGGC TGTACGCCAA CCCCGCGTTC GAGACGATCA CCGGCCTGGC GCGGCACGCC GTCATCGGCA AGACGCACGA GGAATCGGGC ATGGCCGCGC TGGTGAGTCT CGATTGGTAC GGGACGGTCG ACGAAGTGTC CGAAACGGGG CAGGACAAGG TCGTCGACTT CACACTGCAC GGCCCGGCCG GGCCCCGCTT TCTCCAGGTC CGTTTCGTTC CCGAGCGGGC GCGCGACGGG TCCGTCCAGT CCGTCCTCGC GCTGGGCCGG GACGTCACCG TGGCGAAACA GGCGGAGGCC GTCCTGCGCG AGAGCGAGAA CCGCCTGCGG CGGATCACGG GCCACGTGCC CGGCATGGTT TTCCAACTCG TGAGCGCGCC GGGCGCGGAG CCGACGTTCA GCTACGTCAG CGAAGGGGCG AGCGCGCTCT GCGGGCTGGC GAGCGAAACG GTGCTGGCCG ACGCGCCACG CTTCCTGGAT CTGATTTTCG ACGAGGACCG GCCGCTGTTC GAGCAGTCGA TGGCGCAGTC GGCGCGCGGG CTCTATCCGT GGAGTTGGGA AGGGCGGATA CGCGCGGGGA GCCTCGGCGA AACCTGGGTC AGCCTGCGCG CTACGCCAAC GCTGCTGCTC GACGGCGGCG TGGTCTGGGA TGGCATCATT CTCAACGTGA CCCAGACCAA GCTCAACGAA CTCGAACTGC GGCAGTCGCG CGAATCCCTG CGGCTGCTGA CGGCTCACCG CGAGGCAGTG CGCGAAGACG AGCGCAAGCA TATCGCGCGC GAGATCCACG ACGAACTCGG ACAATTGCTC ACCGCGCTGC GCATGGAGGT TTCCGCGGTC GGCATGGCCT TCGGCCGCGA TAATCCGGAA CTGGACGAGA AAGTGCGGTC GATGAAAACG GTCATCAACC AGACGATCCA GACGGTTCGC CAAGTGGCGA CGTCCTTGCG CCCGGCCGCG CTCGACCTCG GGCTCGAGAC CGCGATCGAC TGGCTGGCGA GCGAGTTCTG CAAGCGTAAC GCGGTCGAGT GCGCGGTCGC GATTCCGGGC GAGATCGCGC TCGACGAAGT CCGCGCGACC GCGCTGTTCC GTATCCTGCA GGAAACGCTG ACCAACATCG CGCGTCACGC CGGCGCGACC TCGGTCTCGA TAAAACTGAA AACGACCGGC GAGGAGATCT GCTTGAAAGT CACCGACAAC GGCCGCGGCT TCGACCCCGA GGAAGCGAAG CAGGGCGGCA GCTTCGGCTT GAAGGGAATC GCCGAACGCG TACTCATCCT CGGCGGAACG ATGACGATAA AAAGCGCACC GGGGCAGGGG GCGGAACTCG CGGTCTGCAT CCCGGCCGCG GACCCGGCAA GCGGAGGGGT GCAATGA
|
Protein sequence | MAARGAAGTS GAAPGSARTI RPADALYPGV LCFTSGMRCL LLVRFVSSFC LLLGAAVLFF ALAGAPRDLA PLVDAVSPKS ALIIVFAALT LILGELDARW ARRVRVGLGA GIVVLAALTL VQQGLRLYPH LAAWPWALLL SLDVGIPAGA ETFRAVNMAT TAALGFALFG VALILLERLG RPVVLWTVQL LCAVCFMLAL MVVMIHVMGV SFVLDGEAPA GREAGWPAAA ALLLLSVGLY FGVSRHAEAR AYYARYEDHK IIGVTTFLLL VTAVGAGLAG AGILLRQSYE VSQQTLKQTQ ASKAILFHDT LIAAQNQALR VARLVGELEG SHLRSLFLGL NDSRTATDGA QKNYELAALE IIEPDLGRTV ALGEIGGETA RVALREPANT WLVRRGAWLL ESHIPIARAG GFTGTLVTHI RLHRVEQLLE QARGLGQTGA LVVCAPRDAT SMQCLPSRQN PQHGRVMLQR VGPPLPMARA LAGEEGIAVA YDNFGVNVIS AYGPIGSTGL GMAQKIATAE LYAPLRERLG LVVASVLGLT LVGAALLWRL VHPLTSRLLE TRAYLQGLTN SVPEAVITTD EGGGIKTCNP ATTALFGYLE PELQARKIGA LFAPTSAVAE RADELIDSSG RMRSTGKVAL ERLGSRKDGT SFPVELTVTP FNLEGKRRFV AVVRDVSARQ AAEEALHRSE EMFRALVDNA PDVIIRIDRG HRRLYANPAF ETITGLARHA VIGKTHEESG MAALVSLDWY GTVDEVSETG QDKVVDFTLH GPAGPRFLQV RFVPERARDG SVQSVLALGR DVTVAKQAEA VLRESENRLR RITGHVPGMV FQLVSAPGAE PTFSYVSEGA SALCGLASET VLADAPRFLD LIFDEDRPLF EQSMAQSARG LYPWSWEGRI RAGSLGETWV SLRATPTLLL DGGVVWDGII LNVTQTKLNE LELRQSRESL RLLTAHREAV REDERKHIAR EIHDELGQLL TALRMEVSAV GMAFGRDNPE LDEKVRSMKT VINQTIQTVR QVATSLRPAA LDLGLETAID WLASEFCKRN AVECAVAIPG EIALDEVRAT ALFRILQETL TNIARHAGAT SVSIKLKTTG EEICLKVTDN GRGFDPEEAK QGGSFGLKGI AERVLILGGT MTIKSAPGQG AELAVCIPAA DPASGGVQ
|
| |