| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_1033 |
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| Symbol | |
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| ID | 3671258 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 1097808 |
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| End bp | 1099811 |
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| Gene Length | 2004 bp |
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| Protein Length | 667 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637709716 |
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| Product | collagenase |
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| Protein accession | YP_314791 |
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| Protein GI | 74317051 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0826] Collagenase and related proteases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.771528 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 8 |
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| Fosmid unclonability p-value | 0.0721423 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCGTTTT GCCGCATGGA ACGCCCAGTG GACCCGCATC AACTCGAACT GCTCGCGCCT
GCGCGCGACG CCGATATCGG TATAGAGGCC GTCAATCACG GCGCCGACGC GGTCTACATC
GGCGGCCCCG CGTTCGGCGC GCGGGCGGCA GCGTGCAACG ATATCGCCGA CATCGCACGG
CTCGTCGCAC ACGCCCATCG CTTCAACGCG CGCGTGTTCG CCACGCTCAA CACCATTCTC
GCCGACGACG AACTCGAGCC GGCACGTCGC CAGATCTGGC AGCTTTACGA AGCCGGCGTC
GACGCGCTGA TCATCCAGGA CATGGGACTC CTGCAGCTCG ACCTGCCGCC GATCCAGCTG
CACGCGAGCA CCCAGTGCGA CATCCGCACG CCGGAGAAGG CGCGCTTCCT GCAGGATGTC
GGGCTGTCGC AACTCGTGCT CGCACGCGAA CTCGATCTCC GGGAGATCGC CGCGATCCGC
GCCGCGACCG ATCCGGCGAC CACGCTCGAA TTCTTCGTCC ACGGCGCGCT GTGCGTGGCC
TACAGCGGGC AGTGCTACAT CAGCCATGCC CACACCGGGC GCAGCGCCAA TCGCGGGGAC
TGCTCGCAGG CCTGCCGCCT GCCGTATCAG GTCACCGACA TGGAGGGCCG CATCGTCGCG
CACGACAAAC ACGTGCTGTC GATGAAGGAC AACAATCAGA GTCGGAACCT CGAGGCGCTC
GTCGACGCCG GCATCCGCAG CTTCAAGATC GAGGGGCGCT ACAAGGACAT GGGCTACGTG
AAGAACATCA CCGCCCACTA CCGCGTTCTG CTCGACGAGA TCCTCGAACG GCGCCCGGAA
TTCGCCCGCG CCTCGTCCGG GCGTACGTCG TTCAGCTTCA CGCCGGATCC CAACCAGAAC
TTCAATCGCG AGTTCACCGA CTACTTCGTG GAAGGCCGCA AGGCCGACAT CGGTGCGTTC
GACACGCCCA AGAATCCCGG CTTGCCGATC GGTCACGTCG TCAAGGTCGC TGACAAATGG
CTCGAGGTGC GGGTCGATGC GGCCGATCTC GTGCTCAACA ACGGCGACGG GCTGTGCTAC
TACACGCTGC AGAAGGAGTT GGCCGGTCTC GCCATCAACC GCGCCGAAAA AGCGGGCGAG
GGCCTGTGGC GCGTGTTCCC CAAGGATCCG ATCGCAGGCT TCAAGGACTT GCGCGCCGGA
ACCCCGGTCA ACCGCAACCG CGACATGAAC TGGACGCGCC TGCTCGCCCG ACCGTCGAGC
GAACGCCGCA TCGCGGTCTG GCTGCGCTTT GGGGAAACGG CGGATGGCTT CGCGCTGACA
TTGACCGACG AGGACGGCCA CACCGCGACC GTCTCAGCGC CTCACGCCAA GGAGGCGGCA
AAGGACGCCG CGAAAAGCGA GCCGATGCTC CGCGAGCAAC TCGGAAAACT CGGCGGGACG
CCTTTCGCCG CGACCGGCAT TGCGCTCGAA CTGAGCGCGT CCTGGTTTCT CCCCCCGTCG
TTTCTCAATG CCCTGCGCCG CGACGCCGTC TCGGCGCTCG AGACCGCGCG CGCCCGCGCC
TACGAACGCC CGCCGCGAGC GCGACCGATC GAGCCGCCGG TCGTCTACCC GGAGGACACG
CTCTCGTATC TCGCCAATGT CGCCAACAGC AAAGCGCGCG ACTTTTACCT CAGGCACGGC
GTCCGGGTCG TCGCCGCCGC TTATGAAGGG CACGCGGAGA CGGGCGAGGT GTCGCTGATG
ATCACGCGCC ACTGCGTGCG CTATTCGCTG TCGCTGTGCC CGAAGCAGGC CAAGGGCGTG
ACTGGCGTGC AGGGGACGGT GCGCGCCGCG CCGCTGACCC TCGTCAACGG CAGCGAAAAG
CTCACCCTGC GCTTCGACTG CAAGCGCTGC GAGATGCACG TGCTCGGAAA GCTCAAGCCC
GCGGTGGCGC GGCAGACGGC GCCGCTGACC TTTTATCGCT CGCGTCCTTC GGCGGCAGGC
GACAACGCGG CGACCGGCAC GTGA
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| Protein sequence | MAFCRMERPV DPHQLELLAP ARDADIGIEA VNHGADAVYI GGPAFGARAA ACNDIADIAR
LVAHAHRFNA RVFATLNTIL ADDELEPARR QIWQLYEAGV DALIIQDMGL LQLDLPPIQL
HASTQCDIRT PEKARFLQDV GLSQLVLARE LDLREIAAIR AATDPATTLE FFVHGALCVA
YSGQCYISHA HTGRSANRGD CSQACRLPYQ VTDMEGRIVA HDKHVLSMKD NNQSRNLEAL
VDAGIRSFKI EGRYKDMGYV KNITAHYRVL LDEILERRPE FARASSGRTS FSFTPDPNQN
FNREFTDYFV EGRKADIGAF DTPKNPGLPI GHVVKVADKW LEVRVDAADL VLNNGDGLCY
YTLQKELAGL AINRAEKAGE GLWRVFPKDP IAGFKDLRAG TPVNRNRDMN WTRLLARPSS
ERRIAVWLRF GETADGFALT LTDEDGHTAT VSAPHAKEAA KDAAKSEPML REQLGKLGGT
PFAATGIALE LSASWFLPPS FLNALRRDAV SALETARARA YERPPRARPI EPPVVYPEDT
LSYLANVANS KARDFYLRHG VRVVAAAYEG HAETGEVSLM ITRHCVRYSL SLCPKQAKGV
TGVQGTVRAA PLTLVNGSEK LTLRFDCKRC EMHVLGKLKP AVARQTAPLT FYRSRPSAAG
DNAATGT
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