| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0956 |
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| Symbol | rpsA |
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| ID | 3672748 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 1018524 |
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| End bp | 1020245 |
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| Gene Length | 1722 bp |
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| Protein Length | 573 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 637709635 |
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| Product | 30S ribosomal protein S1 |
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| Protein accession | YP_314714 |
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| Protein GI | 74316974 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0539] Ribosomal protein S1 |
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| TIGRFAM ID | [TIGR00717] ribosomal protein S1 |
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Plasmid Coverage information |
| Num covering plasmid clones | 1 |
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| Plasmid unclonability p-value | 0.00000014577 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCTACTG CTACCGCTTC TTCCGCTCCC GCCTCCATGG AAAGCTTCGC CGCGCTGTTC
GAGGAGTCGC TCTCGCATCA GGAGATGCGT CAGGGCGAGG TCATCACCGC CGAGATCGTC
GGCATCGACC ACAACTTCGT GACCGTGAAC GCCGGCCTCA AATCCGAGAG CCTGATTCCG
CTCGAAGAAT TCAAGAACGA CCAGGGCGAA GTCGAAGCCA AGGTCGGCGA TTTCGTTTCC
GTCGCCATCG AATCGATCGA AGACGGCTTC GGGGCGACCA AGCTGTCGCG CGAGCGTGCG
AAGAAACTGG CAGCGTGGCT CGACCTGGAA GCGGCCATGA ACGAAGGCCG CGTCGTTTCG
GGCATGGTGC AGGGCAAGGT CAAGGGCGGC CTGACGGTGC TGGTCGGCGG CCTGCGCGCT
TTCCTCCCGG GTTCGCTGGT CGACATGCGC CCGGTCAAGG ACACCACGCC CTACGAATAC
AAGGAAATGG AGTTCAAGGT CATCAAGCTC GACCGCAAGC GCAACAACGT CGTCGTGTCG
CGCCGTGCCG TGCTCGAAGA GACCATGGGC GCCGATCGGG AAGCGCTGAT GGAAAGCCTG
AAGGAAGGCT CGATCGTCAA GGGCGTCGTC AAGAACATCA CCGACTACGG CGCGTTCGTC
GACCTCGGCG GCATCGACGG CCTGCTCCAC ATCACCGACA TGGCGTGGCG CCGCGTCAAG
CATCCGACCG AAGTCGTGCA CGTCGGCCAG GAGCTCGAAG CCAAGATCCT GCGCTACGAC
ACCGAGAAGA ACCGCGTTTC GCTCGGCCTG AAGCAGCTCG GCGACGATCC GTGGGTCGGC
ATCGCACGCC GTTACCCCCA GGGCACCCGC ATGTTCGGCA AGGTCGCGAA CCTGACCGAC
TACGGTGCGT TCGTCGAGAT CGAAGAGGGC ATCGAAGGTC TGGTCCACGT TTCCGAAATG
GACTGGACCA ACAAGAACGT CAGCCCGTCG AAGATCGTGC AGCTCGGCGA CGAAGTCGAA
GTCATGGTGC TCGACATCGA CGAGGACAAG CGCCGCATCT CGCTCGGCAT GAAGCAGTGC
AAGTCGAACC CGTGGGAAGA CTTCGCGATG AACCACAAGA AGGGCGACAA GGTCTCCGGC
GCGATCAAGT CGATCACCGA CTTCGGCGTG TTCATCGGCT TGCCTGGCGG CATCGACGGC
CTCGTCCACC TGTCCGACCT GTCGTGGAGC GTGCCTGGCG AAGAAGCCGT GCGCAACTTC
CGCAAGGGCC AGGACGTGGA AGCCGTGGTG CTCGGCATCG ATCTCGAGCG CGAGCGCATC
TCGCTCGGCA TCAAGCAGCT CGAAGGCGAT CCGCTGACCA GCTACGCGAC CGGCCACGAG
AAGGGCAGCA TCGTCAAGGG CACGATCAAG ACCGTTGAAG CCAAGGGCGC CACCGTCAAG
CTCGACAGCG ACATGGAAGG CTATCTGCGT GCCTCCGAAG TCTCGCGTGA CCGCGTCGAA
GACATGCGCA GCCACTACAA GGAAGGCGAC GAAATCGAAG CCATGATCAT CAACGTCGAT
CGCAAGAACC GCGTGATCAA CTTGTCGATC AAGGCCAAGG ACATGACCGA GCAGGACGCG
GCGATGAAGA AATTCGCAGC CGAATCCGCT GCGGCCGCGA GCGGCTCGAC CAATCTGGGA
GCGCTGCTGA AGGCCAAGCT CGACAACAAG AACGCTGAGT AA
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| Protein sequence | MSTATASSAP ASMESFAALF EESLSHQEMR QGEVITAEIV GIDHNFVTVN AGLKSESLIP
LEEFKNDQGE VEAKVGDFVS VAIESIEDGF GATKLSRERA KKLAAWLDLE AAMNEGRVVS
GMVQGKVKGG LTVLVGGLRA FLPGSLVDMR PVKDTTPYEY KEMEFKVIKL DRKRNNVVVS
RRAVLEETMG ADREALMESL KEGSIVKGVV KNITDYGAFV DLGGIDGLLH ITDMAWRRVK
HPTEVVHVGQ ELEAKILRYD TEKNRVSLGL KQLGDDPWVG IARRYPQGTR MFGKVANLTD
YGAFVEIEEG IEGLVHVSEM DWTNKNVSPS KIVQLGDEVE VMVLDIDEDK RRISLGMKQC
KSNPWEDFAM NHKKGDKVSG AIKSITDFGV FIGLPGGIDG LVHLSDLSWS VPGEEAVRNF
RKGQDVEAVV LGIDLERERI SLGIKQLEGD PLTSYATGHE KGSIVKGTIK TVEAKGATVK
LDSDMEGYLR ASEVSRDRVE DMRSHYKEGD EIEAMIINVD RKNRVINLSI KAKDMTEQDA
AMKKFAAESA AAASGSTNLG ALLKAKLDNK NAE
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