Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_0896 |
Symbol | |
ID | 3672687 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | + |
Start bp | 944968 |
End bp | 946764 |
Gene Length | 1797 bp |
Protein Length | 598 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637709575 |
Product | ATP-dependent DNA helicase RecQ |
Protein accession | YP_314654 |
Protein GI | 74316914 |
COG category | [L] Replication, recombination and repair |
COG ID | [COG0514] Superfamily II DNA helicase |
TIGRFAM ID | [TIGR00614] ATP-dependent DNA helicase, RecQ family [TIGR01389] ATP-dependent DNA helicase RecQ |
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Plasmid Coverage information |
Num covering plasmid clones | 27 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCCCGAAA CCCCTTTAAG CCTCCTCAAC CGCGTCTTCG GCTATCCCGC GTTCCGTGGT GAGCAGGCCG CGATCGTCGA TACGGTCGTC GCCGGCGACG ATGCGCTGGT GCTGATGCCG ACGGGCGGCG GCAAGTCGCT GTGCTACCAG ATCCCCGCGC TGTTGCGCGA AGGCTGCGCG GTCGTCGTCT CGCCGCTGAT CGCGCTTATG CAGGACCAGG TCGCGGCGCT GCAGGAGTTG GGCATCGCCG CCGCCTTCCT GAATTCGAGC CTCGACGGCG CCACCGCCGC GCGGGTCGAG CGCGATTTCG TTTCGGGGCA GTTGAAGCTG CTCTACGTCG CCCCCGAGCG CCTGTTGACG CCGCGTTTTC AGAGCCTGCT CGCCGAGGCA CGCATCGCGT TGTTCGCGAT CGACGAGGCG CACTGCGTGT CGCAATGGGG CCACGACTTC CGCCCGGAAT ACCTCGGCCT GTCGGCGCTG CACGAACGCT TCCCCGAGGT GCCGCGCATC GCGCTGACCG CGACGGCCGA CGCCGCGACG CGCGCCGAAA TCCTGCAACG CCTTGATCTA GGCGCCGCGC GCGTCTTCGT CGCGAGTTTC GACCGCCCCA ACATCCGCTA CCGTATCGCC GAGAAAACCG AGCCGCGCCG GCAACTGCTC GACTTCCTCG CCGAACACAC AGGCGAGGCC GGCATCGTCT ATTGCAGCAC GCGCAAGAAA GTCGAAGAAA CCGCCGACGC GCTGAAGCAG GCCGGCCTCA CGGCGCTGCC GTATCACGGC GGCATGGACA ACGACACGCG TCGCCGCCAT CAGGAAAAAT TCCTGCGCGA GGAGGGCGTC GTCATGGTCG CGACGCTCGC GTTCGGCATG GGCATCGACA AGCCCGACGT GCGCTTCGTC GCCCACCTCG ACCTGCCGCG CTCGGTCGAG GGCTACTACC AGGAAACCGG CCGCGCCGGC CGCGACGGCG AGCCGGCCGA GGCGTGGATG GCCTGGGGCC TGCAGGACGT CGTCACCCAG CGCCGCTTCA TCGATGAAGG CGAGGCCGGA GACGCGCACA AGCGCATCGG CCACGCCAAG CTCGACGCCC TGGTCGGCCT GTGCGAAGCG GCCAGCTGCC GCCGCGTCGC GCTATTGAGC TACTTCGGCG AAGCCAGCCA GCCCTGCGGC AACTGCGACG TCTGCCTCAA TCCGCCCACG CTGTGGGACG GCACCGAGGC CGCACAGAAA TTGTTAAGCA CCGTCTACCG CACCGGCCAG CGCTTCGGCG CCGGGCACGT GATCGACGTG CTGCTCGGCA AGACGACCGA GAAGATCGAC CGCTTCGGCC ACAGCCAGCT GAGCGTGTTC GGCATCGGCG CCAGCCAGAC CGACAAGGTG TGGCGCGCCG TGCTGCGGCA GCTGGTGGTG CGCGGCCTGC TGGAGGTGGA CCACAGTGCC TACGGCGCGC TCAAGCTCAC CCAAGCCGCG AAGCCCGTGC TCAAAGGCGA GGAAACCGTG ATGCTGCGCG CCATCGAAGC GCGCCCGGCG CGCAAGAAAT CGCGCCTCGC CCCCAGTTCC GGCGCCGGCG TCCACGACGA CGAAGACCCG CTGTTCCTCT CCCTGCGCGC CTGGCGCCGC GAAACCGCCA ACGAAAAGGG CGTGCCCGCC TACGTCATCC TGCACGACGC CACGCTGCGC GAGATCGCCG CGCGCCGCCC CGCCACGCTG GCCGAGCTGG GCGAGATATC CGGGCTGGGG ACGAAGAAGC TGGAAGCATA CGGCGAGGAC GTGTTGGCGG TGGTGGCGGA GGGGTGA
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Protein sequence | MPETPLSLLN RVFGYPAFRG EQAAIVDTVV AGDDALVLMP TGGGKSLCYQ IPALLREGCA VVVSPLIALM QDQVAALQEL GIAAAFLNSS LDGATAARVE RDFVSGQLKL LYVAPERLLT PRFQSLLAEA RIALFAIDEA HCVSQWGHDF RPEYLGLSAL HERFPEVPRI ALTATADAAT RAEILQRLDL GAARVFVASF DRPNIRYRIA EKTEPRRQLL DFLAEHTGEA GIVYCSTRKK VEETADALKQ AGLTALPYHG GMDNDTRRRH QEKFLREEGV VMVATLAFGM GIDKPDVRFV AHLDLPRSVE GYYQETGRAG RDGEPAEAWM AWGLQDVVTQ RRFIDEGEAG DAHKRIGHAK LDALVGLCEA ASCRRVALLS YFGEASQPCG NCDVCLNPPT LWDGTEAAQK LLSTVYRTGQ RFGAGHVIDV LLGKTTEKID RFGHSQLSVF GIGASQTDKV WRAVLRQLVV RGLLEVDHSA YGALKLTQAA KPVLKGEETV MLRAIEARPA RKKSRLAPSS GAGVHDDEDP LFLSLRAWRR ETANEKGVPA YVILHDATLR EIAARRPATL AELGEISGLG TKKLEAYGED VLAVVAEG
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