| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0810 |
|---|
| Symbol | |
|---|
| ID | 3673507 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 851682 |
|---|
| End bp | 852638 |
|---|
| Gene Length | 957 bp |
|---|
| Protein Length | 318 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637709488 |
|---|
| Product | ribosomal large subunit pseudouridine synthase D |
|---|
| Protein accession | YP_314568 |
|---|
| Protein GI | 74316828 |
|---|
| COG category | [J] Translation, ribosomal structure and biogenesis |
|---|
| COG ID | [COG0564] Pseudouridylate synthases, 23S RNA-specific |
|---|
| TIGRFAM ID | [TIGR00005] pseudouridine synthase, RluA family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 0.043607 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGATGGACG ATTATAAGGG AAATAGCGGG GGCGACGTCC GCGAGCTCGT CATCCCCGAC
GCGCAGGGCG GGCTGCGTCT GGATCAGGCC TTGTCGGCCC TGCTGCCGGA GTTTTCGCGC
AACCGCATCC AGAACTGGAT CCGTGCGCGC AAGATCGTCG TCGACGACGC CTGGGGCACG
ACCAAGATGA AGGTCAGCGG CGGCGAATCG GTCCGCGTCC AGGTCGAGCC CGACCCGGGC
GCGACGCCCG ACGCGCCTGA GGCGATTCCG CTCGACGTCG TCTACGAGGA CTCGATGCTG
CTCGTCATCA ACAAGCCGGT GGGCCTCGTC GTCCATCCCG GCAGCGGCAA CCGCGACGGC
ACGCTGCTCA ACGCGCTGCT GCACCGCGTG CCGCAGGTCG CCGAATTGCC GCGCGCGGGC
ATCGTTCACC GGCTCGACAA GGACACCTCG GGTCTGCTCG TCGTCGCCAA GACGCTGCGT
GCCCACACCG ACCTCGTGCG CCAGCTGCAG GCGCGCACCG TCAAGCGCGA ATATCTGGCG
CTGGTGTACG GCGAGGTCGA CCGTGGGGGC ACCGTCGACG CGCCACTCGC GCGCGACCCG
CACAACCGCA CCAAGCGCAC GGTCCACAGC CTCGGCAAGG AAGCCGTCAC CCATTACGAC
GTGGTCGAGC GCTTTCCCGG CATCACGCTC CTGCGCTGCA AGCTCGAGAC CGGCCGCACC
CACCAGATCC GCGTGCACAT GCAGCACGTC GGCCACCCGC TGGTCGGCGA CACGGTCTAC
AGCGCAAGCC GCCGCAGCCA TCTCAAGATT CCGTTCCCGC GCCAGGCGCT GCATGCCGAG
AAACTTGGTC TGATCCATCC CGTGACCGGC GAATTCGTGC ACTGGGAATG CCCGCTGCCG
CCCGACTTCG GCTCGCTGCT GCAGGCCTTG CGCGACAACA CCGACTGGGT CAAGTGA
|
|---|
| Protein sequence | MMDDYKGNSG GDVRELVIPD AQGGLRLDQA LSALLPEFSR NRIQNWIRAR KIVVDDAWGT
TKMKVSGGES VRVQVEPDPG ATPDAPEAIP LDVVYEDSML LVINKPVGLV VHPGSGNRDG
TLLNALLHRV PQVAELPRAG IVHRLDKDTS GLLVVAKTLR AHTDLVRQLQ ARTVKREYLA
LVYGEVDRGG TVDAPLARDP HNRTKRTVHS LGKEAVTHYD VVERFPGITL LRCKLETGRT
HQIRVHMQHV GHPLVGDTVY SASRRSHLKI PFPRQALHAE KLGLIHPVTG EFVHWECPLP
PDFGSLLQAL RDNTDWVK
|
|---|
| |