Gene Tbd_0793 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0793 
Symbol 
ID3673490 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp835718 
End bp838030 
Gene Length2313 bp 
Protein Length770 aa 
Translation table11 
GC content63% 
IMG OID637709471 
Productsurface antigen (D15) 
Protein accessionYP_314551 
Protein GI74316811 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG4775] Outer membrane protein/protective antigen OMA87 
TIGRFAM ID[TIGR03303] outer membrane protein assembly complex, YaeT protein 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.27416 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAAAAC CCATGACCCT GACCCGTCTG ACGCTGGCCC TCGCTGCGGT ATTCGTCACG 
CATGCCGCAT CCGCCGAGGC GCCTTTCGTC GTCAAGGACA TCCGCGTCGA GGGTATCCAG
CGCACCGAGG CCGGCACGGT TTTCAGCTAT CTGCCGGTCA AGGTCGGCGA TACGATGACC
GACGAGAAGA CCGCTGCCGC GATCAAGGCC TTGTACGCGA CCGGGTTCTT CAAGGACGTC
AGGCTCGAGG CGCGCGACGG CGTCGTGATC GTGACCGTGC AGGAGCGGCC GTCGATCGCC
AAGATCACCT TGTCCGGCAT CAAGGAATTC TCCGAGGACG ATCTCAAGGC CGGGCTCAAG
CAGACCGGCC TTGCCGAAGG GCGCGTGCTG GATCGATCGC TGGTCGAGAA GGCCGAGCAG
GAACTGCAGC GCCAGTACTT CAACCGCGGC AAGTACGCGG TCGAGATCAA GTCGACGCTG
ACGCCGCTCG AGCGCAACCG CGTCGCCGTG CAGTTCGACG TCGTCGAAGG CGACAGCGCG
AAGATCCGCC AAATCAACAT CGTCGGCAAC AAGGCGTTCA AGGAGAAGGA GCTGCTCAAC
CAGCTCACCT CGACGACGCC CAACTGGCTG ACCTGGTACA CCAAGAACGA TCAGTATTCG
AAGACGCGTC TTGCGGGCGA CCTCGAGGCG CTGCGCTCGT TCTATCTCAA CCGCGGCTAC
CTCGAATTCA ACGTCGACTC GACCCAGGTG TCGATCTCGC CCGACAAGCA GGGTATCTAC
ATCACGGTCA ACGTCACCGA GGGGCCGCAG TACCGCGTCT CGGACGTCAA GCTCGCCGGA
CAGATGCTGG TACCCGAAGC CGAGCTCAGG AAGCTCATCA CGCTCGAGCC GGGCGAAGTG
TTCGAGCGCG ACCGCCTGAC CGAGTCGACG AAGAAGATCG GCGACCGCCT CGGCAACGAC
GGCTACGCCT TTGCCAACGT CAACGCCGTG CCCGAGCTCG ACAAGGAGAA GAGCACCGTC
GCGTTCACGC TTTTCGTGGA TCCGGGCCGG CGCGTCTACG TCAACCGCAT CAACGTCGCC
GGCAACACGC GCACGCGCGA CGAGGTCGTG CGCCGCGAAA TTCGCCAGAT GGAAGGCGCC
TATTACGACG CCGAGAAGAT CAACCGCTCG CGTGACCGCC TCAACCGTCT CGGCTACTTC
AACGAGGTCA ACATCGAGAC CCCGAGCGTG GCGGGAACGA CCGACCAGGT CGACGTCAAC
GTCAGCGTCG CCGAGAAGTC GACCGGCAAC ATCATGCTCG GCGCCGGTTT CTCCTCGTCC
GAAGGCCTCG TGCTGTCGGG CTCGGTCTCG CAAAGCAACG TCTTCGGTAC CGGCAACCGG
CTCTCGGCAC AGATCAACTC GGGGAGCGTC AATACGGTCT ATTCGCTCTC GTACACCAAT
CCCTACTACA CGATCGACGG CATCAGCCTC GGCTACGACA TCTACCGGCG CGACGTCGAC
GCAAGCGAAC TCGACGGCGT CGGCGACTAC GAGACGTCGA CCTACGGCGC CGGCGTGCGC
TTCGGCCTGC CGATCAATGA ACGCGATTTC ATTTCCTTCG GCCTGACCTA CGAGCAGACG
TCGATCACGA CCGATGCCGA CAGCCCGACC AACTACCAGA AGTTCGAGGA GGAGTTCGGC
AGCGACAACG ACACCGTGCG CGTCGACACC TCGTGGGCAC GCGATACGCG CAATAGCCAC
CTGTTCCCGA CCCGCGGTCT GTTCCAGCGC GTGGCGGCCG AAGTCGGCAC GCCGCTCGGC
AGTCTCGAGT ACTACAAGCT GTCGTTCCAG CACCAGCAAT ACTTCCCGCT CAGCAAGCGC
TTCACGCTCA TGCTGAACGG CGAAGTCGGC GTCGGCGGCG GCCTGTCGGA CAAGCCGCTG
CCGTTCTTCA AGAACTTCTA CGCAGGCGGC ACGAGTTCGG TGCGCGGCTT CGAGAACGGC
ACGCTCGGTC CGAAGGACGA CGAGAACAAC GCGCTCGGCG GCGACAAACG CGTCGTCGGC
AACGCCGAGC TGTTCTTCCC GCTGCCCGGC CTCAAGGACG ACCAGTCCCT GCGCATGTCG
GCCTTCGTCG ACGCGGGCGC GACCTTCGGC CCGAATGATG ACCAGCACCG CTACGAGAAT
TTCGCCTTCG GTGACCTGCG CTATTCGGCG GGCGTCGCCG TGCTGTGGGT CTCACCGCTC
GGCCCGCTCA AGTTCAGCCT CGCACAACCC CTCTCGAGCA AGGAAGACGA CGAGGAAGAG
ATGTTCCAAT TCACCTTGGG CAACGTGTTC TGA
 
Protein sequence
MKKPMTLTRL TLALAAVFVT HAASAEAPFV VKDIRVEGIQ RTEAGTVFSY LPVKVGDTMT 
DEKTAAAIKA LYATGFFKDV RLEARDGVVI VTVQERPSIA KITLSGIKEF SEDDLKAGLK
QTGLAEGRVL DRSLVEKAEQ ELQRQYFNRG KYAVEIKSTL TPLERNRVAV QFDVVEGDSA
KIRQINIVGN KAFKEKELLN QLTSTTPNWL TWYTKNDQYS KTRLAGDLEA LRSFYLNRGY
LEFNVDSTQV SISPDKQGIY ITVNVTEGPQ YRVSDVKLAG QMLVPEAELR KLITLEPGEV
FERDRLTEST KKIGDRLGND GYAFANVNAV PELDKEKSTV AFTLFVDPGR RVYVNRINVA
GNTRTRDEVV RREIRQMEGA YYDAEKINRS RDRLNRLGYF NEVNIETPSV AGTTDQVDVN
VSVAEKSTGN IMLGAGFSSS EGLVLSGSVS QSNVFGTGNR LSAQINSGSV NTVYSLSYTN
PYYTIDGISL GYDIYRRDVD ASELDGVGDY ETSTYGAGVR FGLPINERDF ISFGLTYEQT
SITTDADSPT NYQKFEEEFG SDNDTVRVDT SWARDTRNSH LFPTRGLFQR VAAEVGTPLG
SLEYYKLSFQ HQQYFPLSKR FTLMLNGEVG VGGGLSDKPL PFFKNFYAGG TSSVRGFENG
TLGPKDDENN ALGGDKRVVG NAELFFPLPG LKDDQSLRMS AFVDAGATFG PNDDQHRYEN
FAFGDLRYSA GVAVLWVSPL GPLKFSLAQP LSSKEDDEEE MFQFTLGNVF