| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0764 |
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| Symbol | |
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| ID | 3673958 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 807379 |
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| End bp | 809043 |
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| Gene Length | 1665 bp |
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| Protein Length | 554 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637709442 |
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| Product | general secretion pathway protein D |
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| Protein accession | YP_314522 |
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| Protein GI | 74316782 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1450] Type II secretory pathway, component PulD |
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| TIGRFAM ID | [TIGR02519] pilus (MSHA type) biogenesis protein MshL |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0000564128 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.152478 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAAGA CCCTATTGCT CGCTGCGCCG CTCGCGCTGG CCGGCTGCGC CGCGACGCTC
ACCGGGCAGG ATACCCGGCA GGCGATCCGC GACGACGTCG CGCAGGCCGC GCAGGCGAAG
CCCGTTGCAC CACCGGCCCT GAGCGACGAT GAGGCCCGCG CTGCGCTGAT GCCGCCCATC
AAGCTCGAGC GTCCGAAAGT TGCTGCGCCA GCCGAACCCC GCTTCGATCT CGCGGTCAGC
GGCGCGCCGG CGCAGGAGGT GTTCCTGGCG ATCGTCTCCG GCACGCCCTA CAGCATGCTC
GTGCACCCGG AAGTCGCGGG CTCGGTTTCG GCCAACCTCA AGAACGTGAC CGTGCCCGAA
GCGCTGTCTG CGATCCGCGA ACTTTACGGC TACGAGTACA CGATCGAGGG CCGCCGCGTC
ATGGTGCACC CGCTGACCCC GCAGACGCGG ATCTTCAAGG TCAACTATCT GGCCGGAACC
CGCGCCGGTG CGTCGGACAC GCGCGTGATC TCGGGCTCGG TCAGCGCCGC CTCGGGCAAC
GGCAACGGCG CGTCCGCAGG CGGCAGCGGC AGCAGCAACC AGCAGTCGCT CGAAACGAGC
AAGATCAGTA CCGCGGTCAA TTCGGATTTC TGGGGCGAAC TGAAGCTCGC GCTCGACGCC
ATCGTCGGCG AATCGGGCAA GGTCATCCTG AGTCCGCAGT CCGGTGTCGT CGTCGTGAAG
ACGCCGCCGC GGACGATGCG CGAAGTCGAG CGTTTCCTCA AGGCGACCGC GCTCGCGGTC
GAGCGCCAGG TCATGCTCGA AGCAAAAATC ATCGAGGTGC GGCTCAGCGA CGGCTTCCAG
ACCGGAATCA ACTGGGCGGC GCTGCACGAG GGGCGGCACA AGTACTCGTC CGGCGCCGAT
GCGGGCAACT TCAATCTGGT GACGGGCGCG GCTTCGGGCT CGCTCGGCAG CGTCCTCGGC
AGCGGTTTGC CGGCCGCATC GGGAACCTCG GGCGGCATCT TCGGACTGGC GTTCCAGACC
AAGAGCTTCG CCGCGCTGAT CAATTTCCTC GAAACCCAGG GCGCGGTCCA TGTCCTGTCG
AGCCCGCGGA TCGCCGCGCT GAACAACCAG AAGGCGGTGC TCAAGGTCGG TACCGACGAC
TTCTTCGTGA CCAACGTCTC CACGACGAGC AACACCGGCG GCGCGGGCAC GACGACGACG
CCGAGCGTGA CGCTGCAGCC CTTCTTCTCG GGGATCGCGC TCGACGTCAC GCCGCAGATC
GACGAGCGCG GGCGAATCAC GCTGCATGTC CGTCCGTCGG TCAGCGTGGT GACCGAGAAA
ATCAAGAACA TCGACGCCGG CGCCGCGGGC AGCCTCACGC TGCCGCTCGC GTCGAGCGCG
GTCTCGGAAA CCGACAGCGT GGTGCAGGTC GAAGACGGCC GCATCGTCGC GATCGGCGGC
ATGATGAAAC AGTCGTTCGA TGACAGCGCC AACCGTGTTC CCGCGATCGG ACGCGTGCCG
CTGCTCGGTT ACTTCTTCGG CAACACCGCG CGCAGCGCGA GCAAGAGCGA GCTCGTGATC
CTGATCAAGC CCACCGTCAT CGACAGCCAG GAAGACTGGC AGGCCGACGC GGAAGCGACG
CGGGCGCGTC TCGAGAAGCT CGAGCGGCAA GCCGCGAATC CGTGA
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| Protein sequence | MMKTLLLAAP LALAGCAATL TGQDTRQAIR DDVAQAAQAK PVAPPALSDD EARAALMPPI
KLERPKVAAP AEPRFDLAVS GAPAQEVFLA IVSGTPYSML VHPEVAGSVS ANLKNVTVPE
ALSAIRELYG YEYTIEGRRV MVHPLTPQTR IFKVNYLAGT RAGASDTRVI SGSVSAASGN
GNGASAGGSG SSNQQSLETS KISTAVNSDF WGELKLALDA IVGESGKVIL SPQSGVVVVK
TPPRTMREVE RFLKATALAV ERQVMLEAKI IEVRLSDGFQ TGINWAALHE GRHKYSSGAD
AGNFNLVTGA ASGSLGSVLG SGLPAASGTS GGIFGLAFQT KSFAALINFL ETQGAVHVLS
SPRIAALNNQ KAVLKVGTDD FFVTNVSTTS NTGGAGTTTT PSVTLQPFFS GIALDVTPQI
DERGRITLHV RPSVSVVTEK IKNIDAGAAG SLTLPLASSA VSETDSVVQV EDGRIVAIGG
MMKQSFDDSA NRVPAIGRVP LLGYFFGNTA RSASKSELVI LIKPTVIDSQ EDWQADAEAT
RARLEKLERQ AANP
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