Gene Tbd_0647 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0647 
Symbol 
ID3672612 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp687863 
End bp689071 
Gene Length1209 bp 
Protein Length402 aa 
Translation table11 
GC content67% 
IMG OID637709319 
Productserine-type D-ala-D-ala-carboxypeptidase 
Protein accessionYP_314405 
Protein GI74316665 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1686] D-alanyl-D-alanine carboxypeptidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCGGGTAA GATTTCCCGC TTTAATTTCC AGCCCTGTCG CGACCGAGCC AATGTCCCTG 
ACCTCACGCC TTGCCGCCGT TTTTCTGCTG TTCGTCCCCC TCGCCGCCGC CGCCGCCGCA
GCGGTCGTTC CCCCGCCCCC TGAACTCGCG GCCAAATCCT GGGTGTTGAT GGATGCCGCG
AGCGGCAGCG TCCTCGTCGA TCATCGTGGA CGCGAGCGCC TGCCGCCGGC GAGCCTGACC
AAGCTCATGA CCTCGCACGT CGCCGCGCTC GAACTCCAGC GCGGCCGCAT CAAGGAGAAC
GACCTCGTCA CGATCAGCGA AAAAGCCTGG CGCATGGGCG GCTCGAAAAT GTTCGTCCGC
GTCGGCAACC AGGTCGCGGT GCACGATCTG CTGCGCGGCA TCATCGTGCA GTCGGGCAAC
GACGCGAGCA TCGCGCTCGC CGAGCATCTG GCGGGCGGCG AGGATACCTT CGCCGCGCTC
ATGAATCAGG AAGCGAAGCG GCTGGGCCTC GCCGACACGC ATTTCGTCAA CGCCACGGGC
TGGCCGGCCG AAGGCCATTA CTCGAGCGCG CTCGACATGG CCAAGCTTGC GCGCGCGATC
ATCATCGAGG ACCCCGCGCA CTACGGCCTC TACGCCGAAA AGGAATTCGT CTGGAACGGT
ATCAAGCAGC CGAACCGCAA TCTGCTGCTG TGGCGTGACC CGTCGGTCGA CGGCCTGAAG
ACCGGCCACA CCGAGGAAGC CGGTTATTGC CTCGTCGCGT CGAGCCAGCG CGACGGCCAG
CGCATGATCG CCGCCGTGTT CGGCACGGAA AGCGAAGCCG CGCGCGCGAC CGAAACCGCG
AAACTGCTCG CCTACGGCTT CAACTTCTTC GACAGCAAGA CCTTCTTCAA GAAAGGTCAG
GCGGTGCAGA CCGTCGAGGT GTGGAAAGGC GCCGCGCGCA CGCTCAAGGC CGGGGTCGCG
GCGGACTTCG CGGCGGTGCT GCCCAAGCGC ACGAGCGGCG AATTCAAGAC GCGCACCGTG
GTGACGAGCG ACCCGCTGGT CGCGCCCGTC AAGGCGGGCG CGCCGCTCGG GCGCGTCGAA
CTTGTCGGCG GCGACGGCAA GGTCGTCAAG CAGGCGCCGC TCGTCGCGCT GGAAACGGTC
GAGGAGGGTG GCTTCTTCCG CCGGATCTGG GACAGCATCC GGCTGTTCTT CAAGGGGCTG
TTCGGCTGA
 
Protein sequence
MRVRFPALIS SPVATEPMSL TSRLAAVFLL FVPLAAAAAA AVVPPPPELA AKSWVLMDAA 
SGSVLVDHRG RERLPPASLT KLMTSHVAAL ELQRGRIKEN DLVTISEKAW RMGGSKMFVR
VGNQVAVHDL LRGIIVQSGN DASIALAEHL AGGEDTFAAL MNQEAKRLGL ADTHFVNATG
WPAEGHYSSA LDMAKLARAI IIEDPAHYGL YAEKEFVWNG IKQPNRNLLL WRDPSVDGLK
TGHTEEAGYC LVASSQRDGQ RMIAAVFGTE SEAARATETA KLLAYGFNFF DSKTFFKKGQ
AVQTVEVWKG AARTLKAGVA ADFAAVLPKR TSGEFKTRTV VTSDPLVAPV KAGAPLGRVE
LVGGDGKVVK QAPLVALETV EEGGFFRRIW DSIRLFFKGL FG