| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0624 |
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| Symbol | |
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| ID | 3673735 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 655939 |
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| End bp | 657999 |
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| Gene Length | 2061 bp |
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| Protein Length | 686 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637709296 |
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| Product | NAD-dependent DNA ligase |
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| Protein accession | YP_314382 |
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| Protein GI | 74316642 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0272] NAD-dependent DNA ligase (contains BRCT domain type II) |
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| TIGRFAM ID | [TIGR00575] DNA ligase, NAD-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.182096 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.661335 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGACC GCGATGTGCA GGCGCGCGCC GCCGCGCTGC GCCGCGAGAT CGAGCGCCAC
AACTACGCCT ACTATGTCCT CGACGCGCCG ACCATTCCCG ACGCCGAGTA CGACCGGCTC
TACCATGAAC TCGAAGCGCT CGAAGCGGCG CATCCCGAGC TTGTCGCCGC CGACTCGCCG
ACGCGCCGCG TCGGCGGCCA GCCGCTGGCC GGCTTCAAGC CGGTGCGGCA CGCGGTGCCG
ATGCTGTCGA TCCGTACCGA GACCGACACC ACGGCTGCCG GGGCGCGTGC CTTCGACGTG
CGGGTGCGCA AGGAACTCGG CCTCGCGCCT GCCGACCCGC CCGTCGAATA CGCCGCAGAA
CTGAAATTCG ACGGCCTCGC CATCAACCTG CGCTACGAGG CGGGCGTGCT CGTCGCGGCC
GCGACGCGCG GCGACGGCGA AACCGGCGAG GACGTCACGC AGAACGTGCG CACGGTGCGC
ACGATTCCCC TGCGCCTGCA CGGCGACGCA CCGCCTGCGG TACTCGAGGT GCGCGGCGAG
GTTTTCATGC GCCGCGACGA CTTCGAACGC TATAACGCGC AGCAGCGCGC CGCCGGCAAG
CCGACGCTCG TCAACCCCAG GAACGGCGCG GCGGGCAGCA TCCGTCAACT CGATCCGGCG
ATCGCGGGTC AGCGGCCGCT GTCCTTCTAC GCCTACGGGC TCGGCGAGGT CGTCGGCTGG
CCCGATGCCC CGGCGACGCA CGGCGCGACG CTCGACGCGC TGCAGGGGCT CGGGGTTCCG
GTCAGCGCCG AGCGCTGCGT CTGCAACGGG GTCGACGACC TGATCGCTTT CCACGACGAC
ATCGCCGCGC GTCGAGACCA GTTGCCGTTC GACATTGACG GCGTCGTCTA CAAGGTGAAC
GCGTTCGCCT TGCAGCGCGA ACTCGGTTTT CTGACGCGCG AGCCGCGCTG GGCGGTGGCG
CACAAGTATC CGGCGCAGGA ACAGCTCACC ACGGTCCTCG GCATCGGCGT CCACGTCGGC
CGCACCGGCG CGCTCACGCC GGTCGCCCGG CTCGCGCCGG TGTTCGTCGG CGGGGTCACG
GTCACCAACG CGACGCTGCA CAACCAGGAC GAAATCGACC GCAAGGACAC GCGCGTCGGC
GACACCGTGA TCGTGCGCCG CGCGGGCGAC GTCATCCCCG AAATCGTCGC GACCGTGCTC
GAGCGCCGGC CGCAGCCCGA GCCGCCTCGC TTCAACATCC TGCAGAGCTA TCCGGTCTGC
CCCGAGTGCG GCTCGCACGT CGTCCGGCTC GAGGGCGAAG CCGTCGCGCG CTGCACCGGC
GGCCTCTACT GCCCGGCCCA GCGCAAGCAG GCGCTGCTGC ATTTCGCCAG CCGGCGGGCG
ATGGACATCG ACGGCGTCGG CGAGAAGCTC GTCGACCAGC TCGTCTCCCG CGAACTCGTG
CGCACGCCGG CCGATCTCTA CCGGCTCCCG CTCGAGACGC TCGCCGGGCT CGAGCGCATG
GCCGAGAAAT CGGCGCGCAA CCTGATCCAA GCGATCGAGA CGAGCAAGTC GACGACGCTC
GCGCGCTTCA TCTACGCGCT CGGCATACGC AACGTCGGCG AAACGACGGC GCGCGACCTC
GCGCGCCATT TCGGCGCGCT CGATGCGCTG CTCGGCGCGA ACGAGACCGC TCTCCTGGGC
GTGCGCGACG TCGGCCCCAT CGTCGCGCAG TCGATCGCGC AGTTTTTCGC CGAACCGCAC
AATCTCGAGG TCGTCGGCAA GCTGCGCGCG CTCGGCGTGC ACTGGCCCGA AACAACGGGT
ATGCAACAAT CAGGGGGTAT CCTCTCCGGC AAGACCCTCG TATTGACCGG AACGCTGCCG
GCGCTGACGC GCGATCAGGC CAAGGAGCGG ATCGAGTCGG CCGGCGGCAA GGTGGCCGGC
TCGGTGTCGA AGAAGACCGA CTACGTCGTC GCCGGCGAGG AAGCAGGCAG CAAGCTCGCG
AAGGCCCGGG AACTCGGCGT CACGATCCTC GACGAAGAGG AGCTGTTGGC GCTGCTCGGA
TCGAATAAAA AGAACGGATA G
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| Protein sequence | MADRDVQARA AALRREIERH NYAYYVLDAP TIPDAEYDRL YHELEALEAA HPELVAADSP
TRRVGGQPLA GFKPVRHAVP MLSIRTETDT TAAGARAFDV RVRKELGLAP ADPPVEYAAE
LKFDGLAINL RYEAGVLVAA ATRGDGETGE DVTQNVRTVR TIPLRLHGDA PPAVLEVRGE
VFMRRDDFER YNAQQRAAGK PTLVNPRNGA AGSIRQLDPA IAGQRPLSFY AYGLGEVVGW
PDAPATHGAT LDALQGLGVP VSAERCVCNG VDDLIAFHDD IAARRDQLPF DIDGVVYKVN
AFALQRELGF LTREPRWAVA HKYPAQEQLT TVLGIGVHVG RTGALTPVAR LAPVFVGGVT
VTNATLHNQD EIDRKDTRVG DTVIVRRAGD VIPEIVATVL ERRPQPEPPR FNILQSYPVC
PECGSHVVRL EGEAVARCTG GLYCPAQRKQ ALLHFASRRA MDIDGVGEKL VDQLVSRELV
RTPADLYRLP LETLAGLERM AEKSARNLIQ AIETSKSTTL ARFIYALGIR NVGETTARDL
ARHFGALDAL LGANETALLG VRDVGPIVAQ SIAQFFAEPH NLEVVGKLRA LGVHWPETTG
MQQSGGILSG KTLVLTGTLP ALTRDQAKER IESAGGKVAG SVSKKTDYVV AGEEAGSKLA
KARELGVTIL DEEELLALLG SNKKNG
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