Gene Tbd_0547 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0547 
Symbol 
ID3673798 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp571979 
End bp573676 
Gene Length1698 bp 
Protein Length565 aa 
Translation table11 
GC content66% 
IMG OID637709218 
ProductATPase, type IV pilus assembly protein PilB 
Protein accessionYP_314305 
Protein GI74316565 
COG category[N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport 
COG ID[COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones19 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGAACGCC GCAAGAAACT GCGCATGGGC GAAACCCTGG TGTCCCAGGG GCTCATCACG 
CTCGACCAGC TGCGCATCGG CCTCAAGGAG CAAAAGGCCA CGGGCCTGCC GATCGGCCGC
CAGCTCGTCG CGCTCGGGTT CATCACCGAG GCGGTGCTGC GCGACCAGCT CGCGAACGCG
CTCGGCAGCC AGGGCATCGA CCTGACCCAG GTCGTCGCCG ACCCCGAAGC GCTGCATCTG
GTGCCCGAGG ATTTTGCGCG CCGCCATCAT CTGCTGCCGA TCGCCCACGA CGCGGCGCGG
AACGTGCTGA CGCTTGCGAC GACCGACATG TTCAACGTCG TCGCGCTCGA CCAGCTCAAG
GCCGGACTCG GCGGCCATCT CGAAATCGAC GCGCTGCTCG CCGGCGAAGC CCAGCTGCTC
GAGTGCATCG ACAAGTTCTA CGGCTTCGAC CTCTCGCTCG ACGGCATCCT GCGCGAAATC
GAAACCGGCG AAGTCGACTA CGCCAGCCTG AATCCCGAGA CCGAGGAATA CACGCAGCCC
GTCGTGCGAC TCGTCGGCGC GCTGCTGACC GATGCCGTCA AGCGCGAATC GTCCGACATC
CACTTCGAAC CCGAGCATGC CTTCCTGCGT ATCCGCTACC GCATCGACGG CGTGCTCGAA
CAGATCCGCA GCCTGCACAA GACCTATTGG CCGGGCATCC TCGTCCGCCT CAAGGTGCTC
TCGGGCATGA ACATCGCCGA GACGCGCGCG CCGCAGGACG GCCGCATGTC GCTCACGCTG
AACGGCCGCC CGATCGACTT CCGCGTCTCC TCGCAGCCCG GCATTCACGG CGAAAACCTC
GTCCTGCGCA TCCTCGACCG CGAAAAATCC ATCATGCCGC TCGAGCAGAT GGGCTTCACC
GCCGACGCGC TGCGCGAACT GCAGCTGATG ATGGCGCGCC CCGAAGGCAT TCTGGTCGTC
ACCGGCCCGA CCGGCTCGGG CAAGACGACG ACGCTCTACT CGATGCTCTC GCATCTCAAC
AACGAGACCG TGAACATCAT GACGCTCGAG GATCCGGTCG AATATCCGGT CACGCTGATG
CGCCAGAGCT CGGTCAACGA GACGCTCAAG CTCGACTTCG CCAACGGCAT CCGCTCGATC
ATGCGGCAGG ATCCGGACAT CATCCTGGTC GGCGAAATCC GCGACAAGGA CACGGCCGAA
ATGGCGTTCC GTGCGGCGAT GACCGGGCAC CAGGTGTTCA CGACGCTGCA CACCAACTCG
GCGCTCGGCG TGTTTCCACG CCTGATGGAT ATCGGCATCC AGCCCGGCAT CCTGTCGGGC
AACATCATCG GCGTGGTCGC ACAACGCCTC GTGCGCAAGC TGTGTCCGCG CTGCAGGGAG
GCCTACAAGC CGGACGAAGA CGAGGCCCGC ATCCTCGGCA TCGACGCGGC CGAGCCGACC
TGGATCTTCC GTGCAACGGG CTGCCCCGCT TGCAGCCACA AGGGCTACCG GGGGCGGCTG
GCGCTGATCG AACTGTTGCG CATGGATCCC GAACTCGACG AGCTCGTCGC CAGCCACGCG
CCCTTGCACG AGATTCGCCG CGCAGCGCTC AGGCACGGCT ACCACCCGCT CGCCGAGGAC
GGCGTCAAGC GCGTGCTCGA CGGCGTCACC TCGCTCGCCG AAGTCGCGCG CGTCGTCGAC
CTGACCGGGC GGGCCTGA
 
Protein sequence
MERRKKLRMG ETLVSQGLIT LDQLRIGLKE QKATGLPIGR QLVALGFITE AVLRDQLANA 
LGSQGIDLTQ VVADPEALHL VPEDFARRHH LLPIAHDAAR NVLTLATTDM FNVVALDQLK
AGLGGHLEID ALLAGEAQLL ECIDKFYGFD LSLDGILREI ETGEVDYASL NPETEEYTQP
VVRLVGALLT DAVKRESSDI HFEPEHAFLR IRYRIDGVLE QIRSLHKTYW PGILVRLKVL
SGMNIAETRA PQDGRMSLTL NGRPIDFRVS SQPGIHGENL VLRILDREKS IMPLEQMGFT
ADALRELQLM MARPEGILVV TGPTGSGKTT TLYSMLSHLN NETVNIMTLE DPVEYPVTLM
RQSSVNETLK LDFANGIRSI MRQDPDIILV GEIRDKDTAE MAFRAAMTGH QVFTTLHTNS
ALGVFPRLMD IGIQPGILSG NIIGVVAQRL VRKLCPRCRE AYKPDEDEAR ILGIDAAEPT
WIFRATGCPA CSHKGYRGRL ALIELLRMDP ELDELVASHA PLHEIRRAAL RHGYHPLAED
GVKRVLDGVT SLAEVARVVD LTGRA