Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_0547 |
Symbol | |
ID | 3673798 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | - |
Start bp | 571979 |
End bp | 573676 |
Gene Length | 1698 bp |
Protein Length | 565 aa |
Translation table | 11 |
GC content | 66% |
IMG OID | 637709218 |
Product | ATPase, type IV pilus assembly protein PilB |
Protein accession | YP_314305 |
Protein GI | 74316565 |
COG category | [N] Cell motility [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2804] Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 19 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGAACGCC GCAAGAAACT GCGCATGGGC GAAACCCTGG TGTCCCAGGG GCTCATCACG CTCGACCAGC TGCGCATCGG CCTCAAGGAG CAAAAGGCCA CGGGCCTGCC GATCGGCCGC CAGCTCGTCG CGCTCGGGTT CATCACCGAG GCGGTGCTGC GCGACCAGCT CGCGAACGCG CTCGGCAGCC AGGGCATCGA CCTGACCCAG GTCGTCGCCG ACCCCGAAGC GCTGCATCTG GTGCCCGAGG ATTTTGCGCG CCGCCATCAT CTGCTGCCGA TCGCCCACGA CGCGGCGCGG AACGTGCTGA CGCTTGCGAC GACCGACATG TTCAACGTCG TCGCGCTCGA CCAGCTCAAG GCCGGACTCG GCGGCCATCT CGAAATCGAC GCGCTGCTCG CCGGCGAAGC CCAGCTGCTC GAGTGCATCG ACAAGTTCTA CGGCTTCGAC CTCTCGCTCG ACGGCATCCT GCGCGAAATC GAAACCGGCG AAGTCGACTA CGCCAGCCTG AATCCCGAGA CCGAGGAATA CACGCAGCCC GTCGTGCGAC TCGTCGGCGC GCTGCTGACC GATGCCGTCA AGCGCGAATC GTCCGACATC CACTTCGAAC CCGAGCATGC CTTCCTGCGT ATCCGCTACC GCATCGACGG CGTGCTCGAA CAGATCCGCA GCCTGCACAA GACCTATTGG CCGGGCATCC TCGTCCGCCT CAAGGTGCTC TCGGGCATGA ACATCGCCGA GACGCGCGCG CCGCAGGACG GCCGCATGTC GCTCACGCTG AACGGCCGCC CGATCGACTT CCGCGTCTCC TCGCAGCCCG GCATTCACGG CGAAAACCTC GTCCTGCGCA TCCTCGACCG CGAAAAATCC ATCATGCCGC TCGAGCAGAT GGGCTTCACC GCCGACGCGC TGCGCGAACT GCAGCTGATG ATGGCGCGCC CCGAAGGCAT TCTGGTCGTC ACCGGCCCGA CCGGCTCGGG CAAGACGACG ACGCTCTACT CGATGCTCTC GCATCTCAAC AACGAGACCG TGAACATCAT GACGCTCGAG GATCCGGTCG AATATCCGGT CACGCTGATG CGCCAGAGCT CGGTCAACGA GACGCTCAAG CTCGACTTCG CCAACGGCAT CCGCTCGATC ATGCGGCAGG ATCCGGACAT CATCCTGGTC GGCGAAATCC GCGACAAGGA CACGGCCGAA ATGGCGTTCC GTGCGGCGAT GACCGGGCAC CAGGTGTTCA CGACGCTGCA CACCAACTCG GCGCTCGGCG TGTTTCCACG CCTGATGGAT ATCGGCATCC AGCCCGGCAT CCTGTCGGGC AACATCATCG GCGTGGTCGC ACAACGCCTC GTGCGCAAGC TGTGTCCGCG CTGCAGGGAG GCCTACAAGC CGGACGAAGA CGAGGCCCGC ATCCTCGGCA TCGACGCGGC CGAGCCGACC TGGATCTTCC GTGCAACGGG CTGCCCCGCT TGCAGCCACA AGGGCTACCG GGGGCGGCTG GCGCTGATCG AACTGTTGCG CATGGATCCC GAACTCGACG AGCTCGTCGC CAGCCACGCG CCCTTGCACG AGATTCGCCG CGCAGCGCTC AGGCACGGCT ACCACCCGCT CGCCGAGGAC GGCGTCAAGC GCGTGCTCGA CGGCGTCACC TCGCTCGCCG AAGTCGCGCG CGTCGTCGAC CTGACCGGGC GGGCCTGA
|
Protein sequence | MERRKKLRMG ETLVSQGLIT LDQLRIGLKE QKATGLPIGR QLVALGFITE AVLRDQLANA LGSQGIDLTQ VVADPEALHL VPEDFARRHH LLPIAHDAAR NVLTLATTDM FNVVALDQLK AGLGGHLEID ALLAGEAQLL ECIDKFYGFD LSLDGILREI ETGEVDYASL NPETEEYTQP VVRLVGALLT DAVKRESSDI HFEPEHAFLR IRYRIDGVLE QIRSLHKTYW PGILVRLKVL SGMNIAETRA PQDGRMSLTL NGRPIDFRVS SQPGIHGENL VLRILDREKS IMPLEQMGFT ADALRELQLM MARPEGILVV TGPTGSGKTT TLYSMLSHLN NETVNIMTLE DPVEYPVTLM RQSSVNETLK LDFANGIRSI MRQDPDIILV GEIRDKDTAE MAFRAAMTGH QVFTTLHTNS ALGVFPRLMD IGIQPGILSG NIIGVVAQRL VRKLCPRCRE AYKPDEDEAR ILGIDAAEPT WIFRATGCPA CSHKGYRGRL ALIELLRMDP ELDELVASHA PLHEIRRAAL RHGYHPLAED GVKRVLDGVT SLAEVARVVD LTGRA
|
| |