| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0533 |
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| Symbol | |
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| ID | 3673784 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 557855 |
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| End bp | 559291 |
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| Gene Length | 1437 bp |
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| Protein Length | 478 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637709204 |
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| Product | RNA polymerase factor sigma-54 |
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| Protein accession | YP_314291 |
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| Protein GI | 74316551 |
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| COG category | [K] Transcription |
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| COG ID | [COG1508] DNA-directed RNA polymerase specialized sigma subunit, sigma54 homolog |
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| TIGRFAM ID | [TIGR02395] RNA polymerase sigma-54 factor |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACACA GCCTCCAGCT CAAGCTCGGT CAGCATCTCA CGCTGACGCC TCAGCTGCAG
CAGTCGATCC GGCTGCTGCA GCTGTCGACG CTCGAGTTGA ACCAGGAACT CGAGCAGATG
CTGCAGGACA ATCCGCTGCT CGAACGCGAG GACGACGACG AGGCGAACCA CGCCGCGACC
GAAGCACCGG CGCACACCGC GGAAGCCGAA GCGCAAAGCA GCGAAACGCC GCAACTCGAG
CGCGCCGAGG CGGAGCCCGT GACGACGCTC GACGACTCCG ACTGGAACGA CTACAGCGCC
GGCAGTGCCG ACGAGGACGA GGACGGCGAT TACGCCCAAG GTTCGGTCGC GGGCGCGACG
CTGCGCGAAC ACCTGCTCAA CCAGCTGATC GTGAGCCCGC TCACCGTGCG CGACCGCGTG
CTCGTCGCCG CACTCATCGA CGATCTCGAC GAAGCCGGTT TCCTCACCCA GCCGCTCGAA
GACATCACGG CGAGCCTGCG CGACGAACTC GAGGACCTCG AGCACGAGGA AGTCGAAACC
GCGCTCAAGC ACCTGCAGAA CATGGACCCG ACCGGCGTCG GCGCGCGCAA TCTGGCCGAA
TGCCTGACGC TGCAACTGCG CGCCCTTCCC GACGACACGC CGGTGCGCGC GGCAGCGATG
CGGCTCACCA CGCACTATCT CGAGCTGCTG GCGGCGCGCG ACGTCGGCAA GCTGAAAAAA
ATGCTCGGGA TCGACGATCC GACGCTGCGC GCGGCGCGCG CGCTGATCCT CTCGCTCAAT
CCGCGGCCCG GCTCGGCCTT CAGCGCCGAA CAGACGCACT ACGTCATCCC CGACGTCTAC
GTGCGCAAGG TCAAGGGCAT GTGGATCGCG AGCCTGAACG CCGACGCGAT GCCCAAGCTG
CGGGTCAACC GCGTCTACGC CGACATCCTG GCGCGACATC GCGAATCGGG CGGCAGCCAG
CTCGCGAGCC AGCTACAGGA GGCGCGCTGG CTGATCAAGA ACGTCCAGCA ACGCTTCGAC
ACGATCCTGC GCGTCTCTCA GGCGATCGTC GATCGGCAGA AGCATTTCTT CGAGCACGGC
GAGGTCGCGA TGCGGCCGCT GGTGCTGCGG GAGATCGCCG ACGCGGTCGA TCTGCACGAA
TCGACGATCT CGCGCGTGAC GACGCAGAAA TTCATGATGA CCCCGCGCGG CCTCTACGAA
CTCAAGTACT TCTTCGGCAG CCACGTCGCG ACCGACAACG GCGGCGCGTG CTCGTCGACC
GCGATCCGCG CGCTGATCAA GCAGTTGATC GCCGCCGAAA GCGGCAAGAA GCCGTTGTCC
GACGGTCAGC TCGCCGACGT CCTCGGCCAG CAGGGCATCG TCGTCGCGCG CCGAACGGTA
GCCAAATACC GCGAGTCGCT GCAGATCCCT CCGGCCAACA TGCGCCGCGC CCTCTGA
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| Protein sequence | MKHSLQLKLG QHLTLTPQLQ QSIRLLQLST LELNQELEQM LQDNPLLERE DDDEANHAAT
EAPAHTAEAE AQSSETPQLE RAEAEPVTTL DDSDWNDYSA GSADEDEDGD YAQGSVAGAT
LREHLLNQLI VSPLTVRDRV LVAALIDDLD EAGFLTQPLE DITASLRDEL EDLEHEEVET
ALKHLQNMDP TGVGARNLAE CLTLQLRALP DDTPVRAAAM RLTTHYLELL AARDVGKLKK
MLGIDDPTLR AARALILSLN PRPGSAFSAE QTHYVIPDVY VRKVKGMWIA SLNADAMPKL
RVNRVYADIL ARHRESGGSQ LASQLQEARW LIKNVQQRFD TILRVSQAIV DRQKHFFEHG
EVAMRPLVLR EIADAVDLHE STISRVTTQK FMMTPRGLYE LKYFFGSHVA TDNGGACSST
AIRALIKQLI AAESGKKPLS DGQLADVLGQ QGIVVARRTV AKYRESLQIP PANMRRAL
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