Gene Tbd_0471 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0471 
Symbol 
ID3673104 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp493680 
End bp495896 
Gene Length2217 bp 
Protein Length738 aa 
Translation table11 
GC content66% 
IMG OID637709142 
Productmetal dependent phosphohydrolase, HD region 
Protein accessionYP_314229 
Protein GI74316489 
COG category[K] Transcription
[T] Signal transduction mechanisms 
COG ID[COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases 
TIGRFAM ID[TIGR00691] (p)ppGpp synthetase, RelA/SpoT family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGAAATCCT CAACCGGGGC CGCGCCTGAA AACTCGCGCA CCCGCAAGCC GGCGCCCGCC 
CCGCGTGCGC CGGCAATGAC GCACGGCTTC GACACACTGC GCGAGCATCT GGCCCACCTC
GGGCCGGAAG ATGTCGCTCA GCTCGAACAG GCCTACGAAT TCAGCCGCAG CGCCCATGAA
GGGCAGTTTC GCAAGAGCGG CGAACCCTAT ATCTCCCATC CGCTCGCCGT CGCCGCGATC
CTCGCGGACT GGCATCTCGA CGCCCAGACC CTCTGCGCCG CCCTGCTGCA CGACGTCGTC
GAGGACACGC CGGCGACGGC CGGCGAGATC GAAGCCCGCT TCGGCAAGGC CGTCGCGGTG
CTGGTCGGCG GCGTCTCCAA GCTCGACAAG CTCGCCTTCG AATCCGAGCA GCACGCGCAG
GCGGAAAACT TCCGCAAGAT GCTGCTGGCG ATGGCGCAGG ACGTCCGCGT GATCCTGGTC
AAGCTCGCCG ATCGCCTGCA CAACATGCAC ACGATGGGCG CGATGCCCGC CGAAAAGCGC
CGCCGCATCG CGACCGAAAC GCTGGAGATC TACGCGCCGA TCGCCAACCG GCTCGGCCTG
CACTCGGTCT ACCAGGAACT CGAGGATCTC GGCTTCCGCT ACAGCCATCC CAACCGCTAC
CAGGTGCTCG CCAAGGCGGT GAAGGCCGCG CGGGGCAACC GTCGCGAGCT GGTCGAACGG
GTCAAGGTCG CGCTGCAGGA AAAGCTCGAG CAATGCAAGA TCGAGGCCGC GATCAGCGGC
CGCGAAAAGC ACCTCTACAG CATCTACCGC AAGATGCAGG AGAAAAACCT CGCGTTTTCC
GAGGTCTTCG ACATCTACGG CTTTCGCGTC GTCGTGCGGG ACCAGCCCGC CTGCTACCTC
GCGCTCGGCG CGCTGCATGC GCTCTACAAG CCGATTCCGG GCAAGTTCAA GGACTACATC
GCGATCCCCA AGGCCAACGG CTACCAGTCG CTGCATTCGA TCCTGTTCGG CCCCAACGGC
ACGCCGATCG AAGTCCAGAT CCGCACCGTC GACATGAACC GTCTCGCCGA GTCCGGCGTC
GCGTCGCACT GGATGTACAA ATCGGCCGAC ACCGCGCTGA ACGACGTGCA GACGCGCACC
CACCGCTGGC TGCAGTCGCT GCTCGACATC CAGGCCGACC ACGGCGACTC GCCCGAATTC
CTCGAACATA TCAAAGTCGA CCTCTTCCCC GACGAGGTCT ACGTGTTCAC GCCGAAGGGC
AAGATCATGG CCTTGCCGCG CGGGGCGACC GCGGTCGACT TCGCCTTCGC CGTGCACAGC
GACGTCGGCC ACCGCTGCAT CGCGGTCAAG ATCAACTACG AGCTGATGCC GCTGCGCACG
CAGCTCAGGA ACGGCGATCA CGTCGAGGTG CTGACCGCGT CGAACGCGAG CCCCAACGCC
GCCTGGCTCA ACTTCGTCGT CACCGGCAAG GCGCGCTCGC ACATCCGCAA CTACCTGCGC
AACACGCGGG TCGAGGAAGC CGCGGCGCTC GGCGAACGCC TGCTCAGGAA CGCGATCGAG
GCGCTGCATC CGGGCGCCGA AGCCGACCCC ACGGTGTGGG ATCGCGTCGT CAAGGACTAC
GGCCTGCAGA CCCGCGACGA ACTCTTCGCC GGGATCGGCC TCGGCCGCAA GCTGCCGCTC
GTCGTCGCCC ACCAGCTGCT GCACGTTCAG GGCGAGAAGA CCGGCGAGCC CGCGCATCCG
CACGCGATCA GCATCCGCGG CACCGAAGGC ATCGCGGTCG AACTGGCGCA GTGCTGCCAT
CCGATTCCGG GTGACCCGAT TCTCGGCTTC ATCCACAAGG ACCGCGGCCT CATCATCCAC
ACCCACGACT GCCCGTCGAT CCGCGCCTTC CGCACCGATC CCGAGAAATG GCTCGACGTC
GAATGGGAGG CCGAGCCGGG CCGCATGTTC GACGTCTCGA TCAAGGTCGT CGTCGGCAAC
AAGCGCGGCG TTCTGGCCAA GGTCGCCGCC TCGATCGCCG AACACGGCTC GAACATCGGC
AACGTGTCGA TGGAGGAAGA GGACGGCAGC CCGTACACCG TGCTGTTCTT CACGGTCCAG
GTCGAAAATC GCGCCCACCT CGCGCGCGTC ATGCGCGGCC TGCGCATGCT GCCCGACGTC
GTCCGGATCT TCCGCATCAA GGGCAAGAAA GACGGCCGCG CGGCCCCCCT CCAATAA
 
Protein sequence
MKSSTGAAPE NSRTRKPAPA PRAPAMTHGF DTLREHLAHL GPEDVAQLEQ AYEFSRSAHE 
GQFRKSGEPY ISHPLAVAAI LADWHLDAQT LCAALLHDVV EDTPATAGEI EARFGKAVAV
LVGGVSKLDK LAFESEQHAQ AENFRKMLLA MAQDVRVILV KLADRLHNMH TMGAMPAEKR
RRIATETLEI YAPIANRLGL HSVYQELEDL GFRYSHPNRY QVLAKAVKAA RGNRRELVER
VKVALQEKLE QCKIEAAISG REKHLYSIYR KMQEKNLAFS EVFDIYGFRV VVRDQPACYL
ALGALHALYK PIPGKFKDYI AIPKANGYQS LHSILFGPNG TPIEVQIRTV DMNRLAESGV
ASHWMYKSAD TALNDVQTRT HRWLQSLLDI QADHGDSPEF LEHIKVDLFP DEVYVFTPKG
KIMALPRGAT AVDFAFAVHS DVGHRCIAVK INYELMPLRT QLRNGDHVEV LTASNASPNA
AWLNFVVTGK ARSHIRNYLR NTRVEEAAAL GERLLRNAIE ALHPGAEADP TVWDRVVKDY
GLQTRDELFA GIGLGRKLPL VVAHQLLHVQ GEKTGEPAHP HAISIRGTEG IAVELAQCCH
PIPGDPILGF IHKDRGLIIH THDCPSIRAF RTDPEKWLDV EWEAEPGRMF DVSIKVVVGN
KRGVLAKVAA SIAEHGSNIG NVSMEEEDGS PYTVLFFTVQ VENRAHLARV MRGLRMLPDV
VRIFRIKGKK DGRAAPLQ