Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_0417 |
Symbol | rplE |
ID | 3671684 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | + |
Start bp | 443144 |
End bp | 443683 |
Gene Length | 540 bp |
Protein Length | 179 aa |
Translation table | 11 |
GC content | 57% |
IMG OID | 637709083 |
Product | 50S ribosomal protein L5 |
Protein accession | YP_314175 |
Protein GI | 74316435 |
COG category | [J] Translation, ribosomal structure and biogenesis |
COG ID | [COG0094] Ribosomal protein L5 |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 8 |
Plasmid unclonability p-value | 0.0000918773 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.235995 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGCGTT TTCAAGAGTT TTATCGTGAG ACGGTGGTGC CGAAACTGAT CGAGCAGTTC GGCTACAAGT CCGTCATGGA AGTCCCTCGC ATCCAGAAGA TCACCCTGAA CATGGGTGTG GGCGAGGCGG TGGCCGACAA GAAGGTCATG GACCACGCGG TCGCCGACAT GCAGAAGATC GCGGGGCAGA AGCCGGTCGT TACCAAGTCG AAGAAGTCGA TCGCGGGCTT CAAGATCCGC GAGAACTACC CGGTTGGCTG CATGGTCACC CTGCGCCGCG GGCAGATGTA CGAGTTCCTC GATCGTCTCG TGACTGTCGC GCTGCCGCGT GTTCGCGACT TTCGTGGTGT TTCCGGCAAG TCCTTCGATG GCCGTGGCAA CTACAACATG GGCATCAAGG AACAGATCAT CTTCCCGGAG ATCGAGTACG ACAAGATCGA TGCGTTGCGT GGGATGAACA TCACGATCAC CACCACCGCG AAGACTGATG ATGAAGCGCG CGCATTGCTC GCCGCCTTCA GTTTCCCGTT CAAGAATTGA
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Protein sequence | MARFQEFYRE TVVPKLIEQF GYKSVMEVPR IQKITLNMGV GEAVADKKVM DHAVADMQKI AGQKPVVTKS KKSIAGFKIR ENYPVGCMVT LRRGQMYEFL DRLVTVALPR VRDFRGVSGK SFDGRGNYNM GIKEQIIFPE IEYDKIDALR GMNITITTTA KTDDEARALL AAFSFPFKN
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