Gene Tbd_0406 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0406 
SymbolrplD 
ID3671673 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp438291 
End bp438908 
Gene Length618 bp 
Protein Length205 aa 
Translation table11 
GC content62% 
IMG OID637709072 
Product50S ribosomal protein L4 
Protein accessionYP_314164 
Protein GI74316424 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0088] Ribosomal protein L4 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0000000159199 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.149553 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGATTTGA CGGTCATTAA CGATCGGGGA GAGCAGGTCG CGAGCGTCGC CGCGTCCGAC 
GAAACCTTCG GTCGCGATTA CAACGAGGCG CTGGTCCATC AGGTTGTCAC CGCCTTTCAG
GCCAATGCGC GCAGCGGTAA CCGTGCGCAG CAGACGCGCG CCGAGGTCAG TGCATCGACG
CACAAGCCGT GGCGGCAAAA GGGCACTGGC CGTGCGCGTT CCGGTCGTGC GTCGAGCCCG
ATCTGGCGCG GGGGTGGTGT GACCTTCCCG AACAAGCCGA ACGAGAACTT CACGCACAAG
GTGAACCGCA AGATGTATCG CGCCGGTCTG GCCGCGATCC TCTCCCAGCT TGCGCGTGAA
GGCAAACTCA AGGTCGTCGA AAGCCTCGGC ATTGAGTCGC CGAAGACCAA GTTGCTCGCG
GGCAAGCTGA AGTCGATGGG CTACGGCAAG GTCATGATCA TCGCCGACGC GATCGACGAC
AACCTGTGGC TGTCGTCGCG GAACCTGCCG AACGTCTACG TGGTCGAGCC GCATCAGGCG
GACCCGTGGA GCCTGGTCAA ATTCGGTAAC GTGCTGATCA CCAAGGCGGC GATCAAGCAG
TTTGAGGAGA TGGTGTGA
 
Protein sequence
MDLTVINDRG EQVASVAASD ETFGRDYNEA LVHQVVTAFQ ANARSGNRAQ QTRAEVSAST 
HKPWRQKGTG RARSGRASSP IWRGGGVTFP NKPNENFTHK VNRKMYRAGL AAILSQLARE
GKLKVVESLG IESPKTKLLA GKLKSMGYGK VMIIADAIDD NLWLSSRNLP NVYVVEPHQA
DPWSLVKFGN VLITKAAIKQ FEEMV