Gene Tbd_0266 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0266 
Symbol 
ID3671408 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp287620 
End bp288753 
Gene Length1134 bp 
Protein Length377 aa 
Translation table11 
GC content68% 
IMG OID637708927 
Productserine-type D-ala-D-ala carboxypeptidase 
Protein accessionYP_314024 
Protein GI74316284 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1686] D-alanyl-D-alanine carboxypeptidase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.179024 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATTTTGA AGCCCCCGAT GAAATTCCTG TGGTTGACGC TCGCCTGGCT GCTATCCGCT 
TCGGCAATCG CCGCGCCGAC CGGTATTGCG GCCCGCGCGT GGGTCATCGT CGATCAGACG
AGCGGGCGAG AACTCGCCTC GCATCAGCCC GACCTGCCGC TCGCGCCCGC GTCGCTGACG
CAGTTGATGA CGGTCTACGT CTTGCTGGGT GACATCCGCC GCAACGCGCT GCGTCTCGAC
GCGGAAGTCC GCGTCCCGGA CGCCGCCGCC GAGGCCGACG GCGCGCGCGT GTTTCTCAAG
CCCGGCGAGC GCGTGCGCGT CGACACGTTG CTGCGCGCGA TACTCGTGCA GTCGGCGAGC
GATGCGACCG TGACGCTGGC GACGGCGACC GACGGCAGCG AGGCCGCGTT CGTCGAGCGC
ATGAATCGCG AAGCTGCGCG GCTCGGCATG AAGCGCACGC ACTTTGCCAA CGCCACGGGT
CTCGCCCAGC CGGGGCACGT TTCCAGCGCG CGCGACCTTG CTGTGCTCGG ACGCGCACTG
CTCCGCGAGC ATCCCGCGCA GCAGGCCTTG TTTGCGCAGA AAGAGTTCAC GCTAGACGGC
CTGACCTACT ACAACGCCAA CCGCCTGCTC TGGCGCGACG GCACCGTGAC CGGGCTGAAA
GTCGGCCGCA ATCCCGAGTC CGGCTATTCG GCCGTGGCGT CGGCGCAGCG GGGCGAGCAG
CGCCGCGTCG CCGTCGTGCT CGGCGCGCGC TCGGATGCCC AGCGCACGCA GGACGCGCTG
CGCCTGCTCA ACTACGGCTT CGAGAAATTC GATAGCGTGC TGCTTTATCG TGCGCGCCAG
CCGGTCAAGG TGGTCCGGCT CTATCGCGGC ACCCGCCAGT CGGTGGGCAT CGGTTTCGAA
CAGGATTTCC ATCTGCTCGC ACCGCGTGGC AGCCTGCCGC GCGTGAAGGC CGAGATCGTG
ACCCAGCGCC CGATCGTCGC ACCGATCCAC AAGGGCCAGC GCATCGGACT GCTGCGCCTG
ACGCTTGACG GCAAGCCGCT CGGCAACCGT CCGCTGGTCG CACTGCACGA CGTCGCCGTT
GCCGGCATCT TCGGGCGCGG CTGGGATTCG CTGCGTCTGC TCTTCGACCA ATGA
 
Protein sequence
MILKPPMKFL WLTLAWLLSA SAIAAPTGIA ARAWVIVDQT SGRELASHQP DLPLAPASLT 
QLMTVYVLLG DIRRNALRLD AEVRVPDAAA EADGARVFLK PGERVRVDTL LRAILVQSAS
DATVTLATAT DGSEAAFVER MNREAARLGM KRTHFANATG LAQPGHVSSA RDLAVLGRAL
LREHPAQQAL FAQKEFTLDG LTYYNANRLL WRDGTVTGLK VGRNPESGYS AVASAQRGEQ
RRVAVVLGAR SDAQRTQDAL RLLNYGFEKF DSVLLYRARQ PVKVVRLYRG TRQSVGIGFE
QDFHLLAPRG SLPRVKAEIV TQRPIVAPIH KGQRIGLLRL TLDGKPLGNR PLVALHDVAV
AGIFGRGWDS LRLLFDQ