| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0226 |
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| Symbol | |
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| ID | 3671368 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 248334 |
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| End bp | 249578 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637708887 |
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| Product | diaminopimelate decarboxylase |
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| Protein accession | YP_313984 |
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| Protein GI | 74316244 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0019] Diaminopimelate decarboxylase |
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| TIGRFAM ID | [TIGR01048] diaminopimelate decarboxylase |
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Plasmid Coverage information |
| Num covering plasmid clones | 28 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.148169 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGAACGCTC CCCATCGCAT CGACGGCCGC CTCCATCTCG AGGGCGTGGC CCTGGACACG
CTCGCCGAGC GCTGCGGAAC CCCCCTCTAC GTCTACTCGC GTGCCGCCCT CGAAGCCGCG
TACCGCGCCT ATGAAGAAGC GTTCGCCGCG ACGCCGCATC TGATCTGTTA CGCAGTCAAG
GCCAACTCGA GCCTGGCCCT CCTGAACCTG TTCGCCCGGA TGGGCGCCGG TTTCGACATC
GTCTCCGGCG GCGAGCTCGC CCGCGTACTC TCGGCGCAGG GCGATCCGCG AAAAGTCGTG
TTCTCGGGCG TCGGCAAACG CGTGGACGAG ATGCGCGCCG CGCTCGAGGC GGGCATTCTC
TGCTTCAACG TCGAATCGAC GAGCGAGCTG CACCGGCTGA ACCGCGTGGC GGGAGAGCTC
GGCAAGGTCG CGCCGGTCTC CTTCCGCGTC AATCCGGACG TCGACCCGAA GACCCATCCC
TATATCTCGA CGGGGCTCAA GGAGAACAAG TTCGGCGTCC CGATCGCGGA GGCCCCGGCG
CTCTATCGCA CGGCAGCCGC ACTTCCGCAC ATCAGGGTGA CCGGCATCGA CTGCCACATC
GGCTCGCAGC TGCTCGACCT GTCCCCGCTT GCCGACGCAG CGGACCGCGT GTTCGCACTC
GTCGACGCGC TCGCGGCCGA AGGCATTGCG CTCGAACACA TCGACCTCGG CGGCGGCGTC
GGAATCTCCT ATCGCGGAGA AACCGCGCCC GACCTCGCCG GCTACGGCCG CGTTCTCGCC
GAACGCTTTG CCGGCCGGCG AGAAACGCTG ATCGTCGAGC CCGGCCGCTC GCTCGTCGGC
AACGCCGGCC TTCTGCTCGC GCGTGTCGAA TACCTGAAGC TGGGCGCAGA CAAGAACTTC
GCGATCGTCG ACGCCGCAAT GAACGACCTC ATGCGGCCCG CACTGTACGA GGCTTATCAC
GAGATCGTCG AGGTGATCGC GCGCCCGCTG CCCAAGCGGC GCTACGACGT CGTCGGCCCG
ATCTGCGAGA CCGGCGATTT CCTGGGATCC GCACGCGAGC TTTCGCTCGA CGAGGGCGAC
CTCGTCGCGC TGCTTTCGTC GGGCGCATAC GGCATGAGCA TGTCGTCGAA CTACAATTCG
CGCCCCCGCG CGGCGGAAAT TCTCGTCGAC AAGAAAGAAA TTCATCTGAT TCGCGAGCGC
GAAACGCAGG AAGGCCTGAT GGCCGGAGAG CGGCTTCTGG ACTGA
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| Protein sequence | MNAPHRIDGR LHLEGVALDT LAERCGTPLY VYSRAALEAA YRAYEEAFAA TPHLICYAVK
ANSSLALLNL FARMGAGFDI VSGGELARVL SAQGDPRKVV FSGVGKRVDE MRAALEAGIL
CFNVESTSEL HRLNRVAGEL GKVAPVSFRV NPDVDPKTHP YISTGLKENK FGVPIAEAPA
LYRTAAALPH IRVTGIDCHI GSQLLDLSPL ADAADRVFAL VDALAAEGIA LEHIDLGGGV
GISYRGETAP DLAGYGRVLA ERFAGRRETL IVEPGRSLVG NAGLLLARVE YLKLGADKNF
AIVDAAMNDL MRPALYEAYH EIVEVIARPL PKRRYDVVGP ICETGDFLGS ARELSLDEGD
LVALLSSGAY GMSMSSNYNS RPRAAEILVD KKEIHLIRER ETQEGLMAGE RLLD
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