| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0196 |
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| Symbol | |
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| ID | 3673642 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 209397 |
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| End bp | 212180 |
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| Gene Length | 2784 bp |
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| Protein Length | 927 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637708857 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_313954 |
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| Protein GI | 74316214 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3063] Tfp pilus assembly protein PilF |
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| TIGRFAM ID | [TIGR02917] putative PEP-CTERM system TPR-repeat lipoprotein |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.935444 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCCCGCGT TTCTTGAACT CCGCCGCCTT CTGCCCGCGC TCTTCGTCGG CAGTGCGCTG
CTTGCCGGCT GTGCCGACGA AAGCGCGCCC TCGCTCGTCG ACCAGGCGAA GAAAATGGCA
GCGGCCGGCG ACGACAAATC CGCGATCATT CAGCTCAAGA ACGCGCTGGC CGCCGACGAG
GACGACGCAG AGGCCCGCTT CGAACTCGGC AAGCTCTATC TCGCAAGGCT CGATCTCGCC
GCAGCCGAAA AGGAATTCAG GCGTGCGCGC GAAGCCGGCT ACCCCGCGGC CGCGGCGAAC
GTCATGATCG CGCGCGCCCT GCTCGGCCAG CGCGCGTTCC AGCGGCTGCT CGACGAGCTT
CCGGCGCCTT CGGGCAAGAG CGACGACGCC CTCGCCCTGC ACGCGCTGCG CGCGACCGCC
GAACTCGGCC TCGGCCGCAA GGACGACGCG CGCAAGACCC TGGCGCAGGC ACAGGCCGAC
GCACCGCGCA ACGCCGAAGT GCAGCTCGCG CTCGCCCAGC TCGCCGCGGC CGACGGCAAA
CCTGCCGACG CCATGAAAGC GGTCGACGAG GCCTTGCAGA TCGACCCCGC GCATCGCGAC
AGCCTGCTGC TGAAAGGCGA CCTGCTCTAC GCGAGTGGAA AATCCGCCGA GGCCACGGCG
ACCTACCGCG ACATCCTGCG CATCGCCCCC CGCCACCCGA ACGCACGGCT GGCGCTCGCC
GGCATCGCGC TCGCCGAGAA CAGGCTCGCC GAGGCGCGCA AGGAAGTCGA CGGCGCGCTC
GCGTTCACGC CGAGCAGCCT CCAGGCCCAC TACCTCCGCG CGCTGATCGA CTTCAAGGAA
GGCAAGACCG AACGCGCGCG CGATGGTCTG GCGGCGGTAC TGAAGAGCGC ACCGGAATTT
CTGCCCGCGT TGCAACTGGG GGGGACCGTG GAATATGCGC TCGGCAACCT GCAGACGGCG
GAGGCCCACT TCAACAAGGT CGTGCAGGCC GCGCCACACG ACCCCTATGC CGTGCGCCTG
CTGGCCGCCA CGCAATTGCG CATGGGACGT TTCGACGACG CCGCGCGCAC GATTGGCGTC
GCGCTCAGGC GGAACGCAGA CGACCCGGCG GCGCTCACCG TGGCCGGTGA AATCGCCTTG
GCGAAGCGCG ACTTCGCGCA GGCCGCACGC TATTTTGAGG ACGCGGCGAG CCGCGACCCC
GGCAACGCGG CGATCCGCAC CGAACTCGGC ATTTCGCGCC TGGGGCTCGG CGACGAACGC
GCGCTGGCCG ACCTGCGGAC AGCCGCCGGC ATGGAGGGCG CGGGCAGCCG CGCGCACACC
TTCCTCATTC TCGACGGCCT GAAGCGGAAG CAGTTCGATG CGGCGCTGGC GAGCATCGCC
GCCCTCGAAA AGAAGGAGGG CGCCAATCCG CTGGTGTGGA ACTACCGGGG TGCGGCCTAT
CTCGGCAAGC AGGACAAGGT CCGCGCGCGC GCGAGCTTCG AGGAGGCGCT CAAGCTCGAC
CGGGGATTTT TCCCGGCGGC TGCCAACCTC GCGCAGCTCG ACCTGCAGGA GAAGCGGCCG
GCGGCCGCGC GCCAGCGCTT CGAAAGCATA CTCGCGGCCG ACCCCAAACA CCTCGGGGCG
ATGCTCGCGT TGGCTGAACT CGCCTTGCGC AGTGGCGACG AGAAAACGCA CACGCGCTGG
CTGGAAAAAG CCGCGGCCGC GCATCCACAA GCCCAGGAGC CGCGGCTTGC CCTCGGCAGC
CATCTGCTGC GCAAGGGCAG CGCCGCGCAG GGGCTCACGG TCGCTCGCGA AGCGGTAAAT
CTCGCGCCCG ACAGTCCGGC CGCGCTCGAA CTGCTTGGGA GCGCCCAGCT TGCGCTCGGC
GATTCGGCGA ACGCCCTCGC CAGCTATCGC AAGCTGGTCG AGCGCCAGCC CGATCAGGCC
GCGCCGCTCG CGAAGCTCGC GTACGCCCAG TGGGTGGCGA AGGACGCCGC AGGCGCGCGC
CGGTCGCTGC AGGCCGCTTT GCAGCGGGAG CCCGACTTCC GCGACGCACA GCTGCTGCTG
GGCCGCATCG AAATCGAAGC CGAGCGCTTC GAAGCTGCGT ATCGCATCGC GCGCCGGATG
CAGGCGCAGA AACCCGAGCA GGCGGCGGGC TTCGTCCTGG AAGGCGACAC GGCGTTCGTC
CAGAAAGATT TCCCGGCCGC GCTCGCGGCC TTCGAGCACG CCCACGCGAT CGCACCGTCG
AGCGCGACGC TCGCCCGCCA GCACCGTGTC CTGAGCGCGC TGCAACGCGC CCCGGAGGGC
GAAAAACGTA TCCTCGCCTG GCTCTCCACG CACGCCGACG ACGCCCCGGC GCGGCTGCTC
CTCGCCGAAA GCCTGATCAA GCGTCACGAG TACGCGGCAG CGGCGCGCCA CTACCTCGTC
CTGCACAAAA AGGCACCCGA CGACCTCGTC GTGCTGAACA ATCTCGCGTG GGCGCTGCAC
CAGTCGAAGG ACGCGCGTGC GCTCGGCTAC GCGACGCGCG CGCTCAAACT GCGGCCCGAA
GATCCGGCGA TCCTCGACAC CTACGGCTGG ATCCTCGCCC AACAAGGGCA GCCGGCCCAG
GGGCTGACAC ATCTGCGCAA AGCACTTTCC AAGGCCCCCG ACGCCGCCGA AATCCGCTAT
CACGTCGCCG CAACCCTGTA TCAGACCGGC GAGCACGACC GCGCGCGCGG CGAACTCGAG
CGACTGCTCG CCGATGCGAC GCGCTTTCCC CAGGAACAGG AAGCGCGTGA ATTGCTCGCC
CGGCTGCGCA ACAAAAAGAG CTAG
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| Protein sequence | MPAFLELRRL LPALFVGSAL LAGCADESAP SLVDQAKKMA AAGDDKSAII QLKNALAADE
DDAEARFELG KLYLARLDLA AAEKEFRRAR EAGYPAAAAN VMIARALLGQ RAFQRLLDEL
PAPSGKSDDA LALHALRATA ELGLGRKDDA RKTLAQAQAD APRNAEVQLA LAQLAAADGK
PADAMKAVDE ALQIDPAHRD SLLLKGDLLY ASGKSAEATA TYRDILRIAP RHPNARLALA
GIALAENRLA EARKEVDGAL AFTPSSLQAH YLRALIDFKE GKTERARDGL AAVLKSAPEF
LPALQLGGTV EYALGNLQTA EAHFNKVVQA APHDPYAVRL LAATQLRMGR FDDAARTIGV
ALRRNADDPA ALTVAGEIAL AKRDFAQAAR YFEDAASRDP GNAAIRTELG ISRLGLGDER
ALADLRTAAG MEGAGSRAHT FLILDGLKRK QFDAALASIA ALEKKEGANP LVWNYRGAAY
LGKQDKVRAR ASFEEALKLD RGFFPAAANL AQLDLQEKRP AAARQRFESI LAADPKHLGA
MLALAELALR SGDEKTHTRW LEKAAAAHPQ AQEPRLALGS HLLRKGSAAQ GLTVAREAVN
LAPDSPAALE LLGSAQLALG DSANALASYR KLVERQPDQA APLAKLAYAQ WVAKDAAGAR
RSLQAALQRE PDFRDAQLLL GRIEIEAERF EAAYRIARRM QAQKPEQAAG FVLEGDTAFV
QKDFPAALAA FEHAHAIAPS SATLARQHRV LSALQRAPEG EKRILAWLST HADDAPARLL
LAESLIKRHE YAAAARHYLV LHKKAPDDLV VLNNLAWALH QSKDARALGY ATRALKLRPE
DPAILDTYGW ILAQQGQPAQ GLTHLRKALS KAPDAAEIRY HVAATLYQTG EHDRARGELE
RLLADATRFP QEQEARELLA RLRNKKS
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