Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Tbd_0152 |
Symbol | |
ID | 3671711 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Thiobacillus denitrificans ATCC 25259 |
Kingdom | Bacteria |
Replicon accession | NC_007404 |
Strand | - |
Start bp | 162197 |
End bp | 164983 |
Gene Length | 2787 bp |
Protein Length | 928 aa |
Translation table | 11 |
GC content | 67% |
IMG OID | 637708813 |
Product | diguanylate cyclase/phosphodiesterase |
Protein accession | YP_313910 |
Protein GI | 74316170 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
TIGRFAM ID | [TIGR00229] PAS domain S-box [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
Num covering plasmid clones | 15 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 12 |
Fosmid unclonability p-value | 0.575219 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAAAGCCT GGTTCGGACG ACTTTCGCTG CGTTACAAAC TGACGCTCGC CGCGCTCGCC GTCGAGGCGG TGATGCTGGC CTTGCTGATC GCCAACGGCG TCCAACACAC CCGCGACGAG CTGCAGCAGC AGGCGGAGCG CCACGTCCGC GAGACCGGAC AGACGCTCGC CGGCGCGCTG CTGGCGCCGC TCGCGCAGCG TGACGACGCG AGCGTCGGCG AAATCGTCGA CGCGCTGCAG CGCGACGGCG GCCTCAAGAT GGTCGCCGTG CGCGACAGCA GCGAGCGCCT CGTGCATCAG AGCGGGACCG AGGGCACCCG CGACGATTTC CGGGTGATGC AGCCGGTCAC GTTCGCCGGC CAGCACTACG GCGAGGTCGC ACTCGTGCTG TCGGGCGCGT TCATCGCCGA GGCCCGCGCC CGCTACGTGC GCGAAAGCCT CTCGATCGCG CTCGCGGCCC TGCTCGTCAC CGGCGTGCTG CTCGCGCTGT CGACGGGCGG CGTGATCCGC CGCTTCGAGG TTCTCACCCG GGCGAGCCGG CGCATGGCGC AGGGCGACCT CGACGTCAAG CTGACCGGCG AGGGGGAGGA CGAGATCGGG CAGCTGATAG GCACCTTCAA CCGCATGGCC GAATCGGTGC GTTTCAACAT CGATCGCGCG CGCGAAAACG AGGCGCGCTT CCATGCCATC GCCGACTACA CCCACGACGT AGAATTTTGG CTCTCGCCCG AGGGCAAGCT GTTGTGGATC AACCCCTCGG TCGAGCGCAT GCTCGGCTAC AGCGTCGGCG AATGCCTCGA CCAGATGCGC TTTCCGGCCG ACATCATTCA TCCCGACGAC CGCGGCGCGG CCGAGGTGCA GCTGCGCCTG GCGCTGCGCG GCACCTCGGG TCAGGGCTAC GCGATGCGGA TCTGTCGCAA GGACGGCGGA CATTTCTGGG TGGCTGTGAA CTGGCAGCCG ATCCACGACG CGAGCGGCGT ATATCAGGGC ATACGCGCGA GCCTTCACAG CATCGACGAC CTCAAGGCGA CCGAGGCGAA TCTGCGGCTC GCGATCAAGG AACTACGGAC GGCCGAAACC CTGCAACGCA CGTATCTCGA AGAAACCGAG CAGGAGCGCG CGCGCCTCGT CTCGCTGCTC TCGGCGATGA ATCTCGGCAT CCTGTTCGTC GCCCCGGACG GGCGGGTGAT CTATCACAAC CCGGTCTTCG GCAGGATGTG GATGATCGAC GATTCGGCCG AACTGATCGG CCTGCCGGTG CACGAGGTGC TCACGCGCTC CGCGGCGACG CTGGCCGAGC CCGACCACTT CTCGCGGCAC CTGCGCGCCG TGCTCGAGAC GCACGAATCG TCTGAGAGCT ACGAGATCCA GATGACCGAC GGCCGCGTCA TCACCGAGCT CGACTACCCG GTGCGCGACC GCGAAGGCCG CTTCATCGGC CACCTGTGGA TCTACGAAGA CGTCACGCGC GAACGCCAGA CCGCCGAGCG GCTGGTGTAT CTGGCCGAGC GCGACGCGCT GACCGGCCTC TACAACCGCC ATCGCTTCCA GCAGGAGCTC GCACGCACGA TGCTCGACAG CGACCGCCAG AAGATGCAGT GCGCGGTCAT GTTCTTCGAC CTCGACGAAT TCAAGACCAT CAACGACAGC TACGGCCATC GTGCCGGCGA CGCGCTGCTG ATCCGCGTGG CCGGCGAGAT CAGCGCGCTG GTGCGGCGTA ACGAAGTGCT CGCGCGCCTC GGCGGCGACG AGTTCGCGAT TCTGCTCCCG GCGCTGCAGG ACAACGAAGC CGAAGCGCTG GCCGACCGCG TCGTCCACGC GATCGCGCAG ATTCCCTTCC GCTTCGAGGG CCAGAGCCTG CGCGTCACCA CGAGCGTGGG CATCGCGTAC TACCCCGCGC ACGCCGTCGA TGCCGACGAC CTCGTCGCCC GCGCCGACAT CGCCATGTAC CAGGCCAAGG ACGCGGGCAA GAACACCTGG CGCGTCTTCC GTGCGGACAG CGCCGCCGAC AGCGAAATGC GCACCCGCCT GTCGTGGGGC GAACGCATCA GCAACGCGCT CGACAAGGGA CTCTTCCAGC TCCATTTCCA GGGCGTCTAC CGCGCGGACG ACGGCGCGCT CTCGCATCTC GAAGCGCTTG TGCGGATGAC CGACGAGCAC CGCCCCGATC AGCTCATCAT GCCGGTGCAC TTCATCCAGC GCGCCGAAAA GAGCGGACGC ATCCTCGACA TCGACCGCTG GGTCGTCCAC GAGACGATCC AGTTGCTCGC CGCCAACCCC TGCATCCCCT CGATCGCGGT CAACCTGTCG GGGCGCTCGC TGTCCGAGCC GAGCCTGCCG CAGACGATCG GTAACGGCCT GCGCGAGGCC GGAGTCAATC CGAGCCGGCT GATCTTCGAG ATCACCGAGA CCGCGGCGGT GGCTGACCTG CAGGACGCGC AGCGCATGAT CGAAGCGCTG CGCCAGCTCG GATGCGGCGT CTGCCTCGAC GATTTCGGCG TCGGCTTCGC CTCGTTCGCC TACCTCAAGC ATCTCGACGT CGACACGATC AAGATCGACG GCATCTTCAT CCGCGACCTG CCCAACGACC CCGACAACCA GGTGTTCGTG CAGGCGATGG TCAGCGTCGC GCTCGGACTC GGCAAATCGG TCGTCGCCGA ATACGTCGAG GACGGCGCGA CGCTCGCCTT GCTACGCCAG TTCGGCGTCG ACCTGGTCCA GGGCTATTAC CTCGACCGTC CGGTCGCCGC CCACCCGGCG CTGCGCGCCG AGGCCTGCAG CGCCTGA
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Protein sequence | MKAWFGRLSL RYKLTLAALA VEAVMLALLI ANGVQHTRDE LQQQAERHVR ETGQTLAGAL LAPLAQRDDA SVGEIVDALQ RDGGLKMVAV RDSSERLVHQ SGTEGTRDDF RVMQPVTFAG QHYGEVALVL SGAFIAEARA RYVRESLSIA LAALLVTGVL LALSTGGVIR RFEVLTRASR RMAQGDLDVK LTGEGEDEIG QLIGTFNRMA ESVRFNIDRA RENEARFHAI ADYTHDVEFW LSPEGKLLWI NPSVERMLGY SVGECLDQMR FPADIIHPDD RGAAEVQLRL ALRGTSGQGY AMRICRKDGG HFWVAVNWQP IHDASGVYQG IRASLHSIDD LKATEANLRL AIKELRTAET LQRTYLEETE QERARLVSLL SAMNLGILFV APDGRVIYHN PVFGRMWMID DSAELIGLPV HEVLTRSAAT LAEPDHFSRH LRAVLETHES SESYEIQMTD GRVITELDYP VRDREGRFIG HLWIYEDVTR ERQTAERLVY LAERDALTGL YNRHRFQQEL ARTMLDSDRQ KMQCAVMFFD LDEFKTINDS YGHRAGDALL IRVAGEISAL VRRNEVLARL GGDEFAILLP ALQDNEAEAL ADRVVHAIAQ IPFRFEGQSL RVTTSVGIAY YPAHAVDADD LVARADIAMY QAKDAGKNTW RVFRADSAAD SEMRTRLSWG ERISNALDKG LFQLHFQGVY RADDGALSHL EALVRMTDEH RPDQLIMPVH FIQRAEKSGR ILDIDRWVVH ETIQLLAANP CIPSIAVNLS GRSLSEPSLP QTIGNGLREA GVNPSRLIFE ITETAAVADL QDAQRMIEAL RQLGCGVCLD DFGVGFASFA YLKHLDVDTI KIDGIFIRDL PNDPDNQVFV QAMVSVALGL GKSVVAEYVE DGATLALLRQ FGVDLVQGYY LDRPVAAHPA LRAEACSA
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