Gene Tbd_0090 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0090 
Symbol 
ID3673868 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp94422 
End bp96311 
Gene Length1890 bp 
Protein Length629 aa 
Translation table11 
GC content66% 
IMG OID637708750 
ProductCBS signal-transduction protein 
Protein accessionYP_313848 
Protein GI74316108 
COG category[T] Signal transduction mechanisms 
COG ID[COG2905] Predicted signal-transduction protein containing cAMP-binding and CBS domains 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones21 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.382061 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGAGG CTGTCAATTC GCTGGTCCAG GCGACCGTCG ACCACCTCGC TCAGTTCGCC 
CCCTTCGATC AGATGGCACG CGAGCACCTG CTCTGGATGG CCCGGCGATT GTCGCTCGGC
TATTTCGCCC AGGGCGAGGT CATTCTTGCG CCCGAGCAGG TCGCGCCGCT GCAGTTTTTC
GTGATCAAGC AGGGGGTCGT GCAAGGTGAA CAGGGCCGCG CGCAAACTAC GGACGGCGCG
CCCTGGCTCG AGCTGCGCGA AGGCGAATGT TTCCCGCTCG GCGCGCTACT CGCCGAGCGC
CCGGTCACGA GCGTCTACCG CGCCGGCAGC GACGCCTTCT GCTACCAGCT CGCGGCAGCG
GATTTCCTGC AGTTGACGCA GCTGAGCGAG CCCTTCAAGG ATTTTTGTAC GCGGCGGATC
GCCAATCTGC TCGAGCATTC GCTGCGCCGG ATTCACGCCG GCTACTCGAG GGCAAGCGCC
GAGCAGCAGT CGATGAGCAG CCGCCTCGCG GCCATCGTGC GCCGCGAGCC CGTGACCTGC
TCGCCGCAAA GCTCGGTGCG GCAGGCCTTG CAGTCGATGA AGACACAGGG CGTCGGGGCG
ATGGTCGCCG TCGAAAATGG CGTCCCGCGA GGCATCCTCA CGCTTCACGA CGTGTTGGAC
CGCGTCGCGC TCGCGGGCGC CGACCTCGAA CGGCCCGTGA TCGACATCAT GAGCACGCAA
CTCACCACGC TGCCGCCGCA CGCGCTTGCC CACGATGCGG CGCTGACCAT GGCCAAGGAG
GGCATCCGCC ACGTTCTCGT GACCGACAAC GGCCGCCTCA CCGGCGTGGT CTCGGAAAAG
GATCTGTTCA GCCTGCAACG CGTTGGGCTC AGCGAAATCA GCACGGCGAT CCGTCACGCG
CCCGATCTCG ATCTGCTCAA GCAGAGCGCT CGCGACATCC AGCAGCTCTC GCGCAACATG
CTCGCGCAGG GCATCGCAGC CGAGCAGTTG ACGCAGATCA TCACCACGCT CAACGACCTG
CTGACGACGC GTGTCATCGA GCTCGAATTG CAGGAGAGTC CCGCCCGCGA CATCGAATTC
TGCTGGCTAG CGCTGGGCTC CGAGGGGCGC TTCGAGCAGA CGCTGAACAC CGATCAGGAC
AACGGCATCA TCTTCGCGCC GAAGGCGGGC GAGTCGCCCA CCGCGCAGCG CGAGGCGCTA
TTGCCCTTCG CCAAACGCGT CAACCTCGCG CTCGCCGAAT GCGGGTTTCC GCTCTGCGGC
GGCGAGGTCA TGGCGTCGAA TCCGAAGTGG TGCCTTTCGC TCGAGGAATG GCAGGACACC
TTCGACCGCT GGATCTATCA CGGCGCGCCG ATGGACCTGC TGCATGCGAC GATCTTCTTC
GATTTCCGTC CGCTCTACGG TGCGGTCGGT CTCGGCGTCG AATTGCGCGA CTGGCTGCGC
GCCGCCGCAC CGAAGAACTC GCGCTTCCTG CACCAGCTTG CGGTCAACGC CCTGCGCAAC
CGCCCGCCGC TCGGGGTCGT GCGCGACTTC GTCACCGGCG ACGATCACGC GGTCGACCTC
AAGCTCAACG GCATCACCCC CTTCGTCGAC GCTGCGCGCA TCTTCAGTCT CGCGATCGGC
GGCACGCAGA CCAACACGCT CGAGCGCCTG CGCGAGATCG CGGCGCCGCT GAAGCTTGCC
AGCCGCGATG TCGACGCCTA CTGCGAGGCC TTCCTCTTCA TCCAGCTGTT GCGCCTGCGC
CTTCACCACG GACAAAGCGA ACAGGGTGCG TCGCTCGGCA ACCGGGTCGA CCCCGACACG
CTCAACAATC TCGACAGCCG CATCCTCAAG GAAGCCTTCC GCCAGGCGCG CAAGCTGCAG
ACCAAGCTCG GCCTGCACTA CCAGGTATGA
 
Protein sequence
MSEAVNSLVQ ATVDHLAQFA PFDQMAREHL LWMARRLSLG YFAQGEVILA PEQVAPLQFF 
VIKQGVVQGE QGRAQTTDGA PWLELREGEC FPLGALLAER PVTSVYRAGS DAFCYQLAAA
DFLQLTQLSE PFKDFCTRRI ANLLEHSLRR IHAGYSRASA EQQSMSSRLA AIVRREPVTC
SPQSSVRQAL QSMKTQGVGA MVAVENGVPR GILTLHDVLD RVALAGADLE RPVIDIMSTQ
LTTLPPHALA HDAALTMAKE GIRHVLVTDN GRLTGVVSEK DLFSLQRVGL SEISTAIRHA
PDLDLLKQSA RDIQQLSRNM LAQGIAAEQL TQIITTLNDL LTTRVIELEL QESPARDIEF
CWLALGSEGR FEQTLNTDQD NGIIFAPKAG ESPTAQREAL LPFAKRVNLA LAECGFPLCG
GEVMASNPKW CLSLEEWQDT FDRWIYHGAP MDLLHATIFF DFRPLYGAVG LGVELRDWLR
AAAPKNSRFL HQLAVNALRN RPPLGVVRDF VTGDDHAVDL KLNGITPFVD AARIFSLAIG
GTQTNTLERL REIAAPLKLA SRDVDAYCEA FLFIQLLRLR LHHGQSEQGA SLGNRVDPDT
LNNLDSRILK EAFRQARKLQ TKLGLHYQV