| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0085 |
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| Symbol | |
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| ID | 3673862 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | + |
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| Start bp | 88385 |
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| End bp | 90601 |
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| Gene Length | 2217 bp |
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| Protein Length | 738 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637708744 |
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| Product | response regulator receiver modulated diguanylate cyclase/phosphodiesterase with PAS/PAC sensor(s) |
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| Protein accession | YP_313843 |
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| Protein GI | 74316103 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.127866 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCACAAGG AGAACGCCCC CGTGTCAGAC GACCCCTTGC ATCCCCACCC GCAGCGGAGC
ACGGTGAGCA GCTTCCCCGC GCGTCCGCGC ATCCTCGTCG TGGACGACGA GATCTTGATC
CTCGAAGGCA TGCGGCGGCT GCTCGCGGCG CGCGACTACG ACGTGACGAC CGCGAACGGC
GGCTGCGAGG CCCTGATCGC GATCGGCAAG CAGCAGTTCG ACGTCATCCT GCTCGATCTC
GGCATGCCCG ACCTGAGCGG CGCCGAAGTG CTGCGTTTCG TCGCGGACCG CAGCGCGGAC
ACGCCGGTGA TCGTCGTGTC CGGAGACAGC ACGATCGACG CCGCGATCCG CGCGCTCAGG
GGCGGCGCAG CCGACTTCGT GCGCAAGCCC TACGAGCCCG AGGAGCTGCT GCGCCGCGTC
GACAACACGC TTACGCGCCG TCGCCTCGAA CGCGAAAACA ACCACATCCT GCAGCGGCTG
CAGCAATCCG AGAAGTGGCA CCGCTTCCTC GTCAACAGTT CGCCCGATTT CATCTACACG
CTCGACTGCG ACGGCCGCTT CACCTTCGTC AACGACCGCG TCGAAAGCCT GCTCGGCTAC
ACGCGCGAGG ACCTGCTCGG ACAGCACTAC AGCACGATCA TCCACGAGGA GGACCTCGCG
CGCGCGGAGC ACGTCTTCAA CGAACGGCGG GCCGGCGACC GCAGCGCGCG CAACATCGAG
ATCCGCCTCA AGTGCAACCC GGGCATGCGG CGGCCGCGCC TCATGAACGG CCGCTGCAAG
GCCGTCGAGC TGACCGCGAC GGGCATGTAT GACGAAGACG CCACGCTTTT CGAGCGCCGC
TTCATCGGCA GCTACGGCGT CGCGAAAGAC GTCACCGAGC GCAAGCAGGC CGAGGAGACC
GTGCATTACC AGGCCTATCA CGACCTGCTC ACCGGTCTGC CGAACCGCGC GCTGTTCCGC
GATCACCTCG CGCTGATGCT CGCGCAGGCC AAGCGCAGCC ACAAGACCCT GGCCGTGCTG
AGTCTCGATC TCGATCATTT CAAGGTCATC AACGACTCGC TCGGCCATAC CATAGGCGAC
GAACTGCTGC TCGCGGTCGG CGCGCGCCTG CGCCAGTGCC TGCGCGAGGG CGACACGCTC
GCGCGCCTCG GCGGCGACGA GTTCGCGGTG CTGCTGCCGA CCCTGCTGTC CCGCGGCGAC
GTCGAACAGA TCTGCCGCAA GATCATCCAG GTCCTGTCCC GGCCCGTGTA CGTCAAGGGT
CATGAAATCT ACATCTCGGT CAGCATCGGT GCCTGCGTCG CGCCCGACGA CGGCGAGATG
ATCGACAGCC TGATCCGTCA GGCGGAGATC GCGATGTACC AGGCCAAGGC GCAGGGCCGC
AGCCGGCTGC AGTTCTGGGA AGCCGGCATG CAGGCCCCCT ATTCCGAGCG CATGCAGATC
GAAGCCGACC TGCGGCGTGC GCTCGCGCGC AACGAATTCG TGCTGTTCTA CCAGCCGCAG
GTCGACACCG TGAGCGGCGA GGTGCGCGGT TTCGAGGCGC TGCTGCGCTG GTGGCACCCG
CAGCGCGGCT TCCTGAGCCC GGCCGAGTTC ATTCCGGTCG CCGAAGAATC CGGCGTCATC
GTGCCGATCG GGGACTGGGT GTTGCGCGAA GCGAGCGCCC AGATGGCCGA ATGGCGCCGC
GCCGGGCTGC CGCAGGTGCG CCTGTCGGTC AACATCTCGG CGCGCCAGCT CGAGAGCCCC
GACTTCGTCG AGAGCGTCAT GCGTGCCGTA CAGGTCCATG CACTCGACGG CCAGCAGATC
GAACTCGAAA TCACCGAGAG CCTGCTGATG CGCGACTTCG AGGCCAACGC GATCAAGCTC
GGGCGCCTGT CGGCGTCGGG CATAAGGCTT GCGATCGATG ACTTCGGAAC CGGCTACAGC
TCGTTCAAGT ACCTCTCTCG CTTCCCGATC CATACGCTCA AGATCGATCA GTCCTTTATC
CAGGAGCTCG AGCGCGAGGA GAACCTCTCG ATCGTCAACG CGATGGTCGC GATGGGCCGA
GGCATGAATC TCAACGTCGT CGCCGAGGGG GTCGAGACGC AGTCGCAACT GGCCTGCCTG
CAGCAGATGC AGTGTCACGA GATGCAGGGC CACTACTACA GCGTGCCGAT GTCTGGCCAC
GATGCCACCG CACTGCTCGG CCGGCATACG CGTGGCTTTG TCGAGGCGGC CGGTTGA
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| Protein sequence | MHKENAPVSD DPLHPHPQRS TVSSFPARPR ILVVDDEILI LEGMRRLLAA RDYDVTTANG
GCEALIAIGK QQFDVILLDL GMPDLSGAEV LRFVADRSAD TPVIVVSGDS TIDAAIRALR
GGAADFVRKP YEPEELLRRV DNTLTRRRLE RENNHILQRL QQSEKWHRFL VNSSPDFIYT
LDCDGRFTFV NDRVESLLGY TREDLLGQHY STIIHEEDLA RAEHVFNERR AGDRSARNIE
IRLKCNPGMR RPRLMNGRCK AVELTATGMY DEDATLFERR FIGSYGVAKD VTERKQAEET
VHYQAYHDLL TGLPNRALFR DHLALMLAQA KRSHKTLAVL SLDLDHFKVI NDSLGHTIGD
ELLLAVGARL RQCLREGDTL ARLGGDEFAV LLPTLLSRGD VEQICRKIIQ VLSRPVYVKG
HEIYISVSIG ACVAPDDGEM IDSLIRQAEI AMYQAKAQGR SRLQFWEAGM QAPYSERMQI
EADLRRALAR NEFVLFYQPQ VDTVSGEVRG FEALLRWWHP QRGFLSPAEF IPVAEESGVI
VPIGDWVLRE ASAQMAEWRR AGLPQVRLSV NISARQLESP DFVESVMRAV QVHALDGQQI
ELEITESLLM RDFEANAIKL GRLSASGIRL AIDDFGTGYS SFKYLSRFPI HTLKIDQSFI
QELEREENLS IVNAMVAMGR GMNLNVVAEG VETQSQLACL QQMQCHEMQG HYYSVPMSGH
DATALLGRHT RGFVEAAG
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