| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0040 |
|---|
| Symbol | |
|---|
| ID | 3673247 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Thiobacillus denitrificans ATCC 25259 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007404 |
|---|
| Strand | + |
|---|
| Start bp | 40581 |
|---|
| End bp | 42122 |
|---|
| Gene Length | 1542 bp |
|---|
| Protein Length | 513 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637708699 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_313798 |
|---|
| Protein GI | 74316058 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG4784] Putative Zn-dependent protease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.257159 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTCAAAG CGGCTTCGGC CGCTTTTTGC ATTGTTGCGG CAAGCCAGCG TTTATCATTG
CGTTCCGGAC GAATAGATGA GGCAGATGTG ACACCCCGAG GGGCTTTCCG CCGTATTGCC
ATGATCCTGG CCGGCGCGCT GGCGCTGAGT CATTGCGCGC AGAATCCCGT GAGCGGCGAG
CGCGACTTCG TGCTGCTGTC CGAGCAGCAG GAAGCCGAAA TGGGCGCGCA GGCGCATCGC
GACGTGCTGA AGGAATACGC GGCGCTCGAC GCGCCCGAAC TGCAGGCCTA TGTCGACGCG
GTCGGCCAGC GTCTCGCGAA GCAAAGCCAT CGCCCGGGGC TGACCTGGCA CTTCACGGTC
ATCGACAGCC CCGACGTCAA CGCCTTCGCA TTGCCCGGCG GCTATGTGTA CGTCACACGC
GGCATCCTGG CCTATCTGAA TTCGGAAGCC GAACTTGCCG GCGTCGTCGG CCACGAGATC
GGCCACGTCA CCGCGCGCCA CGGCGTGCGC CAGCAAAGCG CCGCCACGGC CGCCGGCCTC
GGCACCGTGC TCGGATCGAT CCTCGTGCCG GGACTGGACA ACCAGGCGGG CGCCTCACTG
TTGCAGACGC TCGCGCAGGC CTGGACCGCC GGGTATGGCC GCGAACACGA ACTCGAGGCC
GACCGGCTCG GCGCGCAATA CCTCGCGAAA ACCGGCTACC GGCCCGAGGC GATGATTGAC
GTCATCGGCG TGCTCAAGAA CCAGGAACGC TTTGCCGCCG AGAGGGCCAA GCGTGACGGC
ACCAAGCCGC GCACCTACCA CGGCACCTTC GATACGCACC CGAGCAACGA CAAGCGTCTG
CAGCAGGTGG TGAACGAGGC GAAGCGCTAT CGGGTCGCGG CGCCGCGCGA GGGGCGCAGC
GAGTATCTCG AGAAGATCGC CGGCGTCTAC TTCGGCGACA GCCCCGAGCA GGGGCTCGTC
CGCGACAACC TGCTGGTGCA CGAGAAACTC GGCCTGGCGA TGCAATTTCC GCCCGCGTGG
CATGTGCAGA ACCATCCCGA CCGGGTGGCA GCGACGAGCC CCGGCGGCGA CGCGATGATC
GAGATCCTGG CCGGGCCGCG GAACGCGCGA CCGCTCGACA CGCTGAAGAA GGGCATCCGG
CTCGATCCCG GCGCGCGCTA CGACAGCGGC AACCTCGGCG GCTTCCCCGC GGCGTTTGCC
GCCGGTGCCC AGCAGGGTAG GCCGGTCGTC GTCGCCGCCG TGGTGTTCAA GGACAGGCAG
TACCTGATCG CCGGCATGAC GCGGGACAAA ACCGCCTACC AGAAGCAACG CGGTACCCTG
CGCGCGGCGA TCAACAGCTT CCGCGAGACG ACCGGCGCCG ACAGGGCGCG TGCGCGTCCC
TATCGCCTGA AGCTCGTGAC GGCCAAGCAC GGCACGACGA TGGCCGAAGT CGCGCGGCAG
AGTCCGCTCG GCGCCGACGG CGAGAGCCAG TTGCGCCTCA TGAACGACCT CTATCCCGGC
GGCGAGCCCA AGGCGGGCCA GCGCCTCAAA GTTGTCGACT GA
|
|---|
| Protein sequence | MLKAASAAFC IVAASQRLSL RSGRIDEADV TPRGAFRRIA MILAGALALS HCAQNPVSGE
RDFVLLSEQQ EAEMGAQAHR DVLKEYAALD APELQAYVDA VGQRLAKQSH RPGLTWHFTV
IDSPDVNAFA LPGGYVYVTR GILAYLNSEA ELAGVVGHEI GHVTARHGVR QQSAATAAGL
GTVLGSILVP GLDNQAGASL LQTLAQAWTA GYGREHELEA DRLGAQYLAK TGYRPEAMID
VIGVLKNQER FAAERAKRDG TKPRTYHGTF DTHPSNDKRL QQVVNEAKRY RVAAPREGRS
EYLEKIAGVY FGDSPEQGLV RDNLLVHEKL GLAMQFPPAW HVQNHPDRVA ATSPGGDAMI
EILAGPRNAR PLDTLKKGIR LDPGARYDSG NLGGFPAAFA AGAQQGRPVV VAAVVFKDRQ
YLIAGMTRDK TAYQKQRGTL RAAINSFRET TGADRARARP YRLKLVTAKH GTTMAEVARQ
SPLGADGESQ LRLMNDLYPG GEPKAGQRLK VVD
|
|---|
| |