Gene Tbd_0034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0034 
Symbol 
ID3673241 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp35262 
End bp37772 
Gene Length2511 bp 
Protein Length836 aa 
Translation table11 
GC content73% 
IMG OID637708693 
ProductDNA helicase/exodeoxyribonuclease V, subunit B 
Protein accessionYP_313792 
Protein GI74316052 
COG category[L] Replication, recombination and repair 
COG ID[COG3893] Inactivated superfamily I helicase 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0563603 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCTCGTCC CCAACCATCG CGCCGGACTC GACTTCGCCC GGGCGCTGGC GCGCGAAGCC 
GGGCGCGCAG CGCTCGTCGC CCCGCAGATC ACGCCCCTCA AGGCCTGGGC CGAGCGCTTC
GCCGAAGCTG CTGCCGAGCC GCAGGCACGT CGACTCGCGC GGCTGCACGC GGCCCTGCGC
CACAGCGACT GGCTCGGTTC GGTCGACAAG TGGGCATTGG CGAACGAATT GCTGCGGCTC
ATCGACGAGC TGTCGGCCGC GCGCGCGCCG GGCGCAACCG GGCAGCCCGT CCTCGACCTT
CCGCCGGACG TCTCGCCGGA GCGTGAAGTC GCGCTCATCG AGGCCGTCTG GCGGACGCTC
AACGCCGGCG GCGACGACCC GCAGGCGCGT TACGCCGCGG CGCTGGACGC GCTCGCTGCC
GACCTCACCC GCGCGCCGCG GCCGATCTTC GGCTACGCGC TCGGCCCGCT CAGCGGCGGC
GAGCAGGCCT TTCTCGCGCG TTGCGCCGAC CATGCGCCGC TGACCCTATA CGAAGGCGAC
GCCGACGACC CCGTCGCCTT GACCCTGCGG CAGGCCTGGC TCGCCACCGA GCCGCCGCTG
CAGGCACGCG CCACGGCGCT CGCCACGCGC TTCGCCGACT CGCCCGTGGT GGAGCAGATC
ACCGTGGCGC CCGCACCGCA TCTTGAAGCG GAGGCGCGCG CCGTCGCGAG CTGGGTCGCC
GCGCAACTGC GCGCGGGCAG GCAGGCGCTC GCACTGATCG CGCTCGACCG CGAAACCGCC
CGCCGGGTAC GCGCGCTGCT CGAACGCCTC GACGTTCTCG TCGCCGACGA AACCGGCTGG
GCGCTTTCGA CGACGGTCGC CGCCGCGGTC GTCGACCGCT GGCTCGAATG CGTGGCCAGC
GACTTTCCGC ACGTCGAGCT GCTCGACCTG CTCAAGTCGC CTTTCGTGCT TGACGATCCA
GCCGCCCGCC AGGACCAGGT TCTGCAGCTC GAACTCGCGC TGCGCCGCCA GCGGGTGGCG
CAGGGCGCAG CCGACATCGA GCGCGTTGCG CGGCAGGAGT TCGGCGCGCT CCCCGCATGG
CTCGCTTCGC TGTTCGACGC ACGCCAGCGT TTTGCCCGCA CCTCCGCCCC GCTCGCGCTC
TGGCTGCAGC GACTCGCCGA CAGCCTCGAC CAGCTCGCCG CCCGGGCACC GCTCGAAGCC
GACGCCGCCG GCGCCCGCGT GTTGGAGACG CTCGCCGCAC TCGGTCGCGA TCTCGCGCAA
GACTCCGAAA AATACGACTT CAACGAATGG CGGCGCTGGC TCGGTCTCGC ACTCGAGTCG
GCGAGCTTCG TCGACGCCGG CGTCGACAGC CCGATCGTGT TGACGTCGCT GCCCGCCGCG
CGCGGACGCA GCTTCGATGC CATCGCGGTG ATCGGCGCAG ACGCCCGTCA CCTGCCCGCA
CTACCCACGC CGGGCCTGTT TTCGCAAGCC ACGCGCCGCC AGCTCGGTCT GCGCACGAGC
GCGGACGACG CCGCCGACGC CGTCACCGAC CTCATCGCAT TGCTCGGCCA GGGACCTGCA
CTCCTGAGTT GGCGCGCATG GAACGACGAC GAGCCCAACC CGGCGTCGCC GCTCGTTCTG
CGCCTCCAGG CCCTGCACCT CGCGGCGTGG AGCAGCGCCC TGCCCGAGCA GGGTATCGGC
GAGCCGCCCG CCCGGGCGAG CACGCTGCCC GGACGCTGCA CGCGCCCGGC GCCGGTCGTG
CCCGCTGCGC GACTGCCGCG GCGCTATTCG CCGACGGCCT ATCAGACACT GCTCGATTGT
CCTTACCATT TCTTCGCCCG CGCCGTACTC GGCATCCGCG AACTCGACGA AGCCGACGAT
GCGCTCGACA AGAGCGACTA CGGCAACGCG CTGCACCGGA TCCTCAAGCG CTTCCACGAC
GGCGACCCGC CGCACGATCC CGCGCAGGCG CTGGCCTTGC TCGACGCCTG CGCGGAGGCC
GAATTCGCGG CGCTGCCCGC GTATACGGCC GCGGCCTGGC GCAGCAAGTG GAGCGCGATC
GCGCCGGCCT ACGTCGACGC CTGGCTCGAG TGGGCGGGCG AAGGCTGGCG CCATGCGTCG
AGCGAATCGG AGTTCGCGGT CGCGGTCGCG GTCGCCGGCC TCGGCGAAGT CACGCTGCAC
GGCCGCGTCG ACCGCGTCGA CCGCCGCGGC GACGCGCTCG CCGTGATCGA CTACAAGACC
GGCAGCGCGC AAGGCCTGAA GAAGAAGCTC AGGATGCCGG ACGAAGCCGT GCAGCTGCCG
TTCTATGCCT GGCTGTGCAA CGCGCGCGCC GCCTACCTGC CGATCAACGA AGCGCCCGTC
GCCCCGCTCG AACTCGACGG CGAGACCGAC GTCGACGCAA TCAGCCGCCG TCTGCCCGAA
CTGCTCGCGG CGCTCGCCGC CGGCGCGCCG CTACCGGCGG GCGGGGTCGA GGCCGACTGC
CGGTACTGCG CGGTGCGCGG CCTGTGCCGC AAGGGCATGT GGCATGCGTG A
 
Protein sequence
MLVPNHRAGL DFARALAREA GRAALVAPQI TPLKAWAERF AEAAAEPQAR RLARLHAALR 
HSDWLGSVDK WALANELLRL IDELSAARAP GATGQPVLDL PPDVSPEREV ALIEAVWRTL
NAGGDDPQAR YAAALDALAA DLTRAPRPIF GYALGPLSGG EQAFLARCAD HAPLTLYEGD
ADDPVALTLR QAWLATEPPL QARATALATR FADSPVVEQI TVAPAPHLEA EARAVASWVA
AQLRAGRQAL ALIALDRETA RRVRALLERL DVLVADETGW ALSTTVAAAV VDRWLECVAS
DFPHVELLDL LKSPFVLDDP AARQDQVLQL ELALRRQRVA QGAADIERVA RQEFGALPAW
LASLFDARQR FARTSAPLAL WLQRLADSLD QLAARAPLEA DAAGARVLET LAALGRDLAQ
DSEKYDFNEW RRWLGLALES ASFVDAGVDS PIVLTSLPAA RGRSFDAIAV IGADARHLPA
LPTPGLFSQA TRRQLGLRTS ADDAADAVTD LIALLGQGPA LLSWRAWNDD EPNPASPLVL
RLQALHLAAW SSALPEQGIG EPPARASTLP GRCTRPAPVV PAARLPRRYS PTAYQTLLDC
PYHFFARAVL GIRELDEADD ALDKSDYGNA LHRILKRFHD GDPPHDPAQA LALLDACAEA
EFAALPAYTA AAWRSKWSAI APAYVDAWLE WAGEGWRHAS SESEFAVAVA VAGLGEVTLH
GRVDRVDRRG DALAVIDYKT GSAQGLKKKL RMPDEAVQLP FYAWLCNARA AYLPINEAPV
APLELDGETD VDAISRRLPE LLAALAAGAP LPAGGVEADC RYCAVRGLCR KGMWHA