Gene Tbd_0022 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTbd_0022 
Symbol 
ID3673857 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameThiobacillus denitrificans ATCC 25259 
KingdomBacteria 
Replicon accessionNC_007404 
Strand
Start bp24148 
End bp25605 
Gene Length1458 bp 
Protein Length485 aa 
Translation table11 
GC content63% 
IMG OID637708681 
Producttrk system potassium uptake membrane protein 
Protein accessionYP_313780 
Protein GI74316040 
COG category[P] Inorganic ion transport and metabolism 
COG ID[COG0168] Trk-type K+ transport systems, membrane components 
TIGRFAM ID[TIGR00933] potassium uptake protein, TrkH family 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value0.78231 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones10 
Fosmid unclonability p-value0.131374 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGTCCGCGA TCCTGCCCGT CATCCACATC CTGTCGAAGG TATTGATGCT TTTTGCATTG 
GCCTTCGCGT TACCGCTCGG GATTTCGGTC GCGCTGGAGG ATGGTGCCGA GCGGGCCTAC
GACGAAGCCA TCGCCATCGC GTTCGTCTCG GGGCTCGTGC TCTGGATGCT GTCACGCCGG
GGTCGGCGCG AGCTGCAGAC CCGCGACGGT TTCCTGCTCG TCGTTCTGAT CTGGGCGGTG
CTGCCCCTGT ATTCGGCGGT TCCGCTGCTC GTGTACATGC CGGAACTAAG CTTCACCGAT
GCCTATTTCG AGGCGGTCTC GGGCCTGACG GCGACCGGCG CGACCGTGCT GTCCGGCATC
GATGACCTGC CGCCGTCGAT CAACATCTGG CGCACCCAGA TGCACTGGAT CGGCGGCATG
GGCGTGATCG TCCTCGTGGT CGCCGTGCTC CCCATGCTCG GCGTCGGCGG ACGGCAGCTG
TTCAAGGCTG AAACGCCGAC CCCGATGAAG GACAGCAAGC TCACGCCGCG CATGGCCGAG
ACGGCCAAAG GGCTGTGGCA GGTGTACGCG GCGATCACGC TCGTCTGCAT GGGCGCGCTG
TGGCTCGGCG GCATGAGCTG GGTCGACGCG ATCGTCCATG GCTTCAGCGT CATGGGGCTC
GGTGGCCTGT CGTCGCACGA CGCGAGCATG GCCTTTTTCG ACTCGGTGCT GCTCGAGGTC
ATCGTCATGG TGTTCGCGCT GATCGCGGGC ATCAGCTTTT CCACTCATTT CCTGGCTTTC
CGCACCCGCA GCCTGCTGAC TTACCGCGTC GATTCGGAAA TCCGCTGGTA TTTCGCGGTG
CTCGCGCTCA GCGTCGCCGG CCTGACCTGG TTCCTGTGGG CCAAGGGCTT CTATCTAGAC
CTCCCCGAAG CGCTGCGCTA CGCCGCGTTC AACACGGTTT CGGTAGCGAC GACGCTCGGA
TTCTCGAACA CCGACTACAA CGTCTGGCCC TACTTCGCCC CGCTCTGGAT GCTGTTCCTC
TCGAGCTTCA TCGCGAGTTC GGGCTCGACC GGCGGCGGCA TCAAGATGCT GCGCGCCGTG
CTGCTCTACA AGCAGGTCTA CCGCGAGATG ATCAAGCTCG TTCACCCCAA CGCCGCGATC
CACACCAAGC TTGGCCGCCA GCCCGTGCCG AACAAGATCA TCTACGCCGT GCTGGCTTTT
CTGTTCATCT ACGTCGCCTC GGTCGTCATT CTCTCGTTCA TTCTCTCGGC GTCGGGGCTC
GACGTCTTCA CGGCCTTTAC GGCCGTCGTC GCGATGGTCA ACAATACCGG GCCGGGACTC
GGCCAGGTCG GCCCGGCCAG CACCTACGCG GTGCTCAACG ATTTCCAGAC CTGGGTCTGC
GCCTTCGCCA TGCTGTTGGG GCGACTGGAA TTCTTTACGC TGCTCGTCGT GCTGACCCCC
GTTTTCTGGA GGAAGTGA
 
Protein sequence
MSAILPVIHI LSKVLMLFAL AFALPLGISV ALEDGAERAY DEAIAIAFVS GLVLWMLSRR 
GRRELQTRDG FLLVVLIWAV LPLYSAVPLL VYMPELSFTD AYFEAVSGLT ATGATVLSGI
DDLPPSINIW RTQMHWIGGM GVIVLVVAVL PMLGVGGRQL FKAETPTPMK DSKLTPRMAE
TAKGLWQVYA AITLVCMGAL WLGGMSWVDA IVHGFSVMGL GGLSSHDASM AFFDSVLLEV
IVMVFALIAG ISFSTHFLAF RTRSLLTYRV DSEIRWYFAV LALSVAGLTW FLWAKGFYLD
LPEALRYAAF NTVSVATTLG FSNTDYNVWP YFAPLWMLFL SSFIASSGST GGGIKMLRAV
LLYKQVYREM IKLVHPNAAI HTKLGRQPVP NKIIYAVLAF LFIYVASVVI LSFILSASGL
DVFTAFTAVV AMVNNTGPGL GQVGPASTYA VLNDFQTWVC AFAMLLGRLE FFTLLVVLTP
VFWRK