| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Tbd_0010 |
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| Symbol | |
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| ID | 3673845 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Thiobacillus denitrificans ATCC 25259 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007404 |
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| Strand | - |
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| Start bp | 8962 |
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| End bp | 11535 |
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| Gene Length | 2574 bp |
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| Protein Length | 857 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637708669 |
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| Product | DNA topoisomerase I |
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| Protein accession | YP_313768 |
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| Protein GI | 74316028 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0550] Topoisomerase IA |
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| TIGRFAM ID | [TIGR01051] DNA topoisomerase I, bacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.301606 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCCAAGC TCGTCATCGT CGAATCGCCG TCGAAGTCCA AGTCGCTGAA GAAATACCTC
GGCGCGGACT ACGACATCCT CGCCAGCTAC GGCCACGTGC GCGACCTCGA GCCGAGGACC
GGCGCGGTCG ACACGGAAAA CTTCTCGATG AAGTACCAGA TCATCGAGCG CAACGCCAAG
CACGTCGACG CCATCGTCAA GGCCGCGAAG AAAGCCGACG AAGTCCTGCT CGCGACCGAC
CCGGACCGCG AAGGCGAGGC GATTTCCTGG CACATCAGCG AAATCCTCAA GGAGAAGAAG
GTCAAGACGC CGATGAAGCG CGTCGCCTTC TACGAGATCA CCGAATCGGC GATCCAGGAC
GCGGTGCGCA ATCCGCGCGA GATCGCGTCC GATCTCGTCG ACGCCCAGCA GGCGCGGCGC
GCACTCGATT ACCTGGTCGG CTTCAACCTC TCGCCGCTCT TGTGGAAAAA GATCAGCCCC
GGGCTGTCGG CCGGCCGCGT GCAGTCGCCC GCGCTCCGCA TGATCGTCGA GCGCGAGGAG
GAGATCGAGG CCTTCGTCGC GCGCGAATAC TGGACGCTGC ACCTCGACTC ACATAAAGGC
AGTCAAGCGT TCACGGCCAA GCTCACGCAC TTCAAGGGCG AGAAGCTCGA CCAGTTCGCG
GTCGAGCACG AGGCGCGCAG CAAGGAATGG CTCGCCACGC TTGAATCCAA GGATGCGCGC
GTGATGCGCA TCGAGAAGAA GCGCCGCGCC CGCAACCCCG CCGCGCCGTT CACGACCTCG
ACGCTGCAGC AGGCCGGCGT GCGTCAGCTC GGTATGACGA CCGACCGCGT GATGCGCACC
GCGCAGCAAC TCTACGAGGG CATCGACCTC GGCGAAGGCC CGGTCGGCCT CATCACCTAC
ATGCGGACCG ACTCGGTCAA CCTCGCGCAG GAAGCGATCA CCGACATCCG CAAGTATGTG
GGCGCCAACT TCGACAAGGA TTACCTGCCG CCGCACGCGG TCCAGTACAA GGCCAAGACC
AAGAACGCGC AGGAAGCGCA CGAGGCCGTG CGCCCGACCT CGGTGTTGCG CACGCCCGAC
GCGGTCAGGC AATTCCTGAC CCAGGACCAG GCCCGGCTTT ACGAACTCGT CTGGAAGCGC
ACGGTCGCCT GCCAGATGAC GGCCGCGCAG TTCGACACGG TCGCTGCCGA CATCACGGTC
GGCGAGGGCA CCTTCCGCGC GACAGGGCAG ACACTCGCGT TCGCCGGCTT TCTCGCGGTC
TACCAGGACG ACGAGGACGA CGAAGGCGAG TCGAAGCTGC CCGCGCTCGT CGAGGGGGAA
ACCCTGCCCG TCGACCGGCT CTACGGCGAA CAGCACTTCA CCCAGCCGCC GCCGCGCTAT
ACGGAAGCGT CCCTGGTCAA GGCGCTCGAG GAATACGGCA TCGGCCGGCC GTCGACCTAC
GCCAGCATCA TCTCGACGCT GCAGGACCGC GAATACGTCG TGCTCGAAAA GAAGCGCTTC
CAGCCGACCG ACGTCGGCCG ACTGGTCAAC TGCTTCCTGA CCCGGCATTT CAGCCACTAC
GTCGACTACG ACTTCACCGC CAAGCTCGAG GACAAGCTCG ACGACGTCTC CAACGGCAAG
CGCGTGTGGT CGCGTCTGCT GGGCGAATTC TGGAGCGGCT TCGAAGGCGA CCTCAAGGCC
AAGCAGGACG TCGAGCGCGG CTGCCCGATC CTCGAAGCCT GCCCCAAGTG CGCCAAGCCG
CTCTTCATGC AAGCGAGCAA GCGCGGGCTC TTCATCGGCT GCTCGGGCTA TCCCGAATGC
GACTACACGC GGCCGCTGCA CCCCGCCACC GCCGAAGGCG ACAACATCCT CGGCAAGGAC
CCGGCGAGCG GGCTCGACGT CAAGCTGCTC TCCGGCCGCT TCGGCCCTTA CGTGCAGATC
GGCGATATGC CCGAGGACAA GAAGGCGCCG AAGCCGCGGC GCGCGTCGTG GCCCAAGGAC
ATTCCGCTCG AAAACGCGAC GCTCGACCTC GCGCTCAAAT TCCTCTCGCT GCCGCGCGAG
GTCGGGCATC ACCCGACCAC CGGCCTGCCG ATCGTCGCCA ACAACGGCCG CTTCGGCCCG
TATCTGCTGC ATGACGGCAA GTTCAAGTCG ATCCCGAAGA CCGACAGCGT CTACGAGATC
GACCTGCCGC GCGCGCTCGA GGTGCTGGCG ATGGAGCGCG CGCCGCGCGG CGCCGACTCG
GCCGCGTCGG TGCTGAAGAA TCTCGGCCCG CACCCGGAAG ACGGCAAGGA CATCACGGTG
CGCTCGGGCC GCTACGGGCC CTACGTCAAG CACGGCAGCA CCAACGCGAC GCTGCCGAAG
GACATCACGC CCGAAGCGGT CACGCTCGAC GAGGCGATCG GCCTGATCGC CGCGCGCGTC
GCCAAGGGGC CGGCGAAGAA GCCGCCGCGC AAGGCGCCGA CCAAGGCGAG CGCGACGAAG
ACTAAGGCCG CCGACACCGC GACCAAGCCC GCAGCGACTA AAAAGGCGGC GACGAAGAAA
GCGCCCGCCA AGCCCGCAGC GACGAAAAAG CCCGCCAGCA AAAAAGCCGC CTAG
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| Protein sequence | MSKLVIVESP SKSKSLKKYL GADYDILASY GHVRDLEPRT GAVDTENFSM KYQIIERNAK
HVDAIVKAAK KADEVLLATD PDREGEAISW HISEILKEKK VKTPMKRVAF YEITESAIQD
AVRNPREIAS DLVDAQQARR ALDYLVGFNL SPLLWKKISP GLSAGRVQSP ALRMIVEREE
EIEAFVAREY WTLHLDSHKG SQAFTAKLTH FKGEKLDQFA VEHEARSKEW LATLESKDAR
VMRIEKKRRA RNPAAPFTTS TLQQAGVRQL GMTTDRVMRT AQQLYEGIDL GEGPVGLITY
MRTDSVNLAQ EAITDIRKYV GANFDKDYLP PHAVQYKAKT KNAQEAHEAV RPTSVLRTPD
AVRQFLTQDQ ARLYELVWKR TVACQMTAAQ FDTVAADITV GEGTFRATGQ TLAFAGFLAV
YQDDEDDEGE SKLPALVEGE TLPVDRLYGE QHFTQPPPRY TEASLVKALE EYGIGRPSTY
ASIISTLQDR EYVVLEKKRF QPTDVGRLVN CFLTRHFSHY VDYDFTAKLE DKLDDVSNGK
RVWSRLLGEF WSGFEGDLKA KQDVERGCPI LEACPKCAKP LFMQASKRGL FIGCSGYPEC
DYTRPLHPAT AEGDNILGKD PASGLDVKLL SGRFGPYVQI GDMPEDKKAP KPRRASWPKD
IPLENATLDL ALKFLSLPRE VGHHPTTGLP IVANNGRFGP YLLHDGKFKS IPKTDSVYEI
DLPRALEVLA MERAPRGADS AASVLKNLGP HPEDGKDITV RSGRYGPYVK HGSTNATLPK
DITPEAVTLD EAIGLIAARV AKGPAKKPPR KAPTKASATK TKAADTATKP AATKKAATKK
APAKPAATKK PASKKAA
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