| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3474 |
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| Symbol | |
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| ID | 3625048 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosarcina barkeri str. Fusaro |
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| Kingdom | Archaea |
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| Replicon accession | NC_007355 |
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| Strand | + |
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| Start bp | 4455616 |
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| End bp | 4456944 |
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| Gene Length | 1329 bp |
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| Protein Length | 442 aa |
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| Translation table | 11 |
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| GC content | 42% |
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| IMG OID | 637702303 |
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| Product | nodulation efficiency protein NfeD |
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| Protein accession | YP_306927 |
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| Protein GI | 73670912 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG1030] Membrane-bound serine protease (ClpP class) |
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| TIGRFAM ID | |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 21 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0121141 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCAAGA AAAGGCCGAT AACCATGTCT GTAAAAAGAG GTCCACATCT CTTCTTTATT
TTATTCCTGT GTTTCGTCCT CATAGCCGTT TCTATGCCAT CTGGGGATGC AGGACCTCAA
CAGAAAGTAC TTGTGCTTGA AGTATCCGAG GCCATTACAC CAGCTTCAGA TGATATTATA
GCAGATGCGA TAGAAAAAGC TGAAAATGAA AATTTTGAGG CTCTTGTAAT TAGCTTGAAT
ACTCCAGGCG GAGGCCTGGA TGAAACTCAA ACAATCATAA GCGCAATTGA GAATGCGAGC
GTGCCTGTTA TCGGGTATGT GCCTGAAAGT GGTAAAGCCT GGTCAGCCGG GACTCTCATC
CTCATGGGAA CAGATATTGC TGCAATGGCG CCTTTCACGG TTATAGGATC GGCTCAGCCC
GTTCAGGTGT CTATAGAGGG AACAAAACCC ATAACAGATG AGAAAATAAT AAATGCCCTT
GTCAAATTTT CGGTTGCAAC AGCCGGTAAG CACGGTAGAA ACGAGACTTT TGCAGAAGAA
GTCATAACGA AAAATAAAAA TCTCGACGCA CAAGAAGCCC TACAGACTGG CGTAATAGAA
TATGTAGCTC CTTCTATTCC GAATTTGCTG ACACAGATTG ACGGGCAGGA GATAAAAGGA
AAAGTCCTGC AAACCGAAAA TGCAGGGATA GAAAACTATG AACCTCCATT TTCTCTCTCC
CTTTTAGGAC TCATTTCAAA CCCGATTATC TCTTCCCTTC TTTTGACCCT GGGAATTTAT
GGGCTAATTT TTGGAATCTC AAGTCCGGGA GCCGGAGCAG AAATTTTTGG ACTCATTTCA
ATCGCACTCG GGTTGATGGG AACAGGCTTT GATATCAATA TAGGGGCAAT TTTCCTCATT
CTCTTAGGAA TAGGACTTCT GATTATTGAA ATTAAAGTAC CTGGTTTTGG GATATTCGGG
GTTGCGGGTC TAATCAGCCT CGTAATAGGA AGTATACTCC TTGTACCTAT GGGAAGCGAA
AATATTTACA CTCCCGAATT TCGAAAGGTT CTTGCCCTGA CGGTTGTTGC CCCTACGGTT
GTTTTCGGAT TGTTCCTGGT TTTTGCAATC TACAAAGTAA CAGAGAGCAG AAAGAAAAAA
CCGGTTATTG GAGAGTTTAT AGGGGAAACT GCCGAAACAA TAGATCCTTT AGGGCCTCAA
AAGACAGGTT TTGTCCGCTA TAAAGGAGAA TACTGGAAAG CTCGTTCAGA AGAGGAAATT
GAACCAAATG TAGAGGTAGA AATCACTGGA AAAGTAAGGG AAACCCTTTT AGTAAAACGA
AAAATGTAA
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| Protein sequence | MSKKRPITMS VKRGPHLFFI LFLCFVLIAV SMPSGDAGPQ QKVLVLEVSE AITPASDDII
ADAIEKAENE NFEALVISLN TPGGGLDETQ TIISAIENAS VPVIGYVPES GKAWSAGTLI
LMGTDIAAMA PFTVIGSAQP VQVSIEGTKP ITDEKIINAL VKFSVATAGK HGRNETFAEE
VITKNKNLDA QEALQTGVIE YVAPSIPNLL TQIDGQEIKG KVLQTENAGI ENYEPPFSLS
LLGLISNPII SSLLLTLGIY GLIFGISSPG AGAEIFGLIS IALGLMGTGF DINIGAIFLI
LLGIGLLIIE IKVPGFGIFG VAGLISLVIG SILLVPMGSE NIYTPEFRKV LALTVVAPTV
VFGLFLVFAI YKVTESRKKK PVIGEFIGET AETIDPLGPQ KTGFVRYKGE YWKARSEEEI
EPNVEVEITG KVRETLLVKR KM
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