| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3399 |
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| Symbol | |
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| ID | 3624646 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosarcina barkeri str. Fusaro |
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| Kingdom | Archaea |
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| Replicon accession | NC_007355 |
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| Strand | - |
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| Start bp | 4358074 |
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| End bp | 4364364 |
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| Gene Length | 6291 bp |
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| Protein Length | 2096 aa |
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| Translation table | 11 |
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| GC content | 38% |
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| IMG OID | 637702227 |
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| Product | hypothetical protein |
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| Protein accession | YP_306852 |
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| Protein GI | 73670837 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG3209] Rhs family protein
[COG5276] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.664853 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.744074 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATAA GTAGGCAAAT CATTTGCTCA TTTATATTTA TTGTTTTTTT GATGATGATT
ACAGGAATTT CGGCAGCAGA AAATACTAAC ATGAGTTTCG TGGGTCACAC AGGTGGTTGG
ATTAGTAATG TTGCCGTGGC TGAAAATTAT GCATATGTTG GAGAAGGTCA GGACTTTGTT
GTATTGGACA TTAAGGATGT TAATAAGCCA AAAGAAGTGG GAAAAGTAGC TATTTCAGGC
TTGGTAGGTG ACATCGCTAT ATCAGGCAAC TATGCCTATA TAACGGAAAA CATCAGTCTA
GTGATTGTGG ATATTTCTAA TCCATCATTG CCAAAAATCG TAGGTAGCTA TAGTTTGACC
AACAGTTTGG CTAGCGGTGT TACAGTATCG GGGAATTACG CTTATGTTAG CTGTCTTAGG
GGTTTTGTCG CTTTGGATAT TTCCAACCCG TCAATGCCAA CATTAGTAGG GAGGTATACT
TATAATACTT ATCCTGCAAG TTATACGTCT GATATTATCA TATCAGGCAA CTATGCCTAT
GTGCCTTTCA GAAACTATGG CCTTCACATT GTTGATATAA GTAATCAATC GTCGCCAACA
CGTATAGCTA TGTTTGATAC TATAAATGTG GTTCAGGTCG CAATATCAAG CAATTACGCC
TATGCAACCA GTGGTGATAA CGGTCTTGCT ATAATTGATA TCAGTAATCT TTCATCTCCA
ACACTTGTGG GGAGTTACAA TCCCACTGAT GCACGTCCAA CTGGTATTGC AGTATCAGAC
AATTATGCGT ATATAGCCAA TGCAAATAGT GGAGACAATG GGTTCACAGT CCTAGACATC
ACTAATGTTT CTTCTCCAAA ATTAGTGGGA AAGTATGCGA CAGGGTCTTC GGATTATGTT
ACGCTTTCTG GCAACCAAGC TTATGTAATT AATGACCAAA CAGGTCTTGC TATTATAAGC
ATAGCAGATA AATCGTCCCC AACGCTTTTA AGCAGCTACA ATTCCATCGG TGGAGCGCGT
GATGTTGCAG TATCGGGCAA TTATGCATAC GTAGCTGACG AATCAAAGGG TCTTTCGGTT
ATCGACATTA CAGATCCATC TTTGCCAAGA TTTGCAGACA GGTATTATAA TAGTGGGACT
ACATATGCCG TTGCAGTATC AGGCAATTAT GCATACTTGG CTAGCGGAGA TAACAAACTT
GTGATTGTCG ATATTTCAAA TTTATCTTCC CTCAAATTTG CGAGCAGTTG TTATACCGGT
TACTCGTTTT ATTCTACAGA TATAGATATA GTAGGCACTT ATGCTTATAT AGCCTATAAC
GGTGGTATTG CAATTGTAGA CGTCGCGAAT CCCTTGTTAC CAAAACTGAT AAGCAAGTAT
GATGTTGGTG ATATTGTGAC CGGTATTGCC GTGGAAGGTG ATTACGCCTA CATAGCCGAT
AACGCTGGTC TCATTATAGT TGATATCACA AATACTTCTT CACCTAAACT TGTAGGCAAG
TATATTACTG GTGCAATTAC ATTTGATATT GCTGTAGCAG GTAATTATGC ATATATAGCC
AACATGGTCA ATGGCTGGAA TGGGATTTTA GTTGTTGATG TCACAAATCG TTCCTCACCA
ACGCTTGCAG GTAAGATTTC TGTTCCTGCT GAAGGCATTA GTATATCAGA TAACTGTGCA
TATGTAAGTT GGTTTGATGG TCTTTACGCT GTTGATATCA CTAATCCTTC CTCGCCAATA
GTTGTAGGTC ATTATGGCAC TGCTGGTGTA GCATCCAATT CTTGCACTCA AGATAGTTAT
GTCTATGTAG CTGATGAGAG AAATGGACTT GTTATTTTAA AGACAGATAT TCAGAATCCT
GAGCCAGTGC CGCCTAAGAG TGATATTCCA AGCTCTACTT ATGGTTCTCC AAGTTCCAAT
CCAAATGGGG CTTATTCCAA AGAACCAGTA AATTTGGGAA CTGGCAGCTA TTTCTACCAA
TATCAAGATT TGTCTATTCC TGGTCGTGGC TTACCTCTGA CAGTTTCTCG TTCCTATAAT
TCTATGGATA ATCGCAGTGG GCTCTTCGGT TCTGGCTGGA CATTCAATTA TAACATGAAT
TTAACTGTTG ATAATAACGG TAATGTAACT GTTTTGGGAG GAGATGGTCA CACTGACACA
TATATTCTAA ATCCAGATGG TACTTATTCT CGGCCTTTGA GTGTTTTTGA TGATTTAATC
AAAAATTCGG ATGAGACTTA CACTTTAACC AAGAAAGACC AAACTAAGTA TAACTTTTCC
TCTGAAGGTA AACTGGTCAA TATAGTAGAT AAGAATGGTA ACCAAATTAA TTTCACATAT
ACTGGCGAAC AACTTACTAA AGTGACTGAC GCTTCCGGAA GAGAACTGAT TTTAGCTTAT
GATCACAATG GTCACATTAT CTCAATTACT GATCCAATGG GCAGGGTTTG GAGTTATTCC
TATGATGATC AGGGCAATTT GATACAGTGT AAGAACCCGA TAGGCGGAAA ATTGAGTTAT
ACATATGATG AAAATCACTG GATGACCTCG ATAACTGATC CTCGAGGAAA CCATCCCATG
AAAAATACCT ATGATGAGAA AGGGCATGTA ATCAGCCAGA GTAATTCTCT CAATGCAACT
TATACCTTTA ATTACGACTC AGAAAATCGA AAGACTACTG AAACGGATCC ATTTGGCAAG
AATAAAACTT ATTCATTCGA TGAACATTTC TGGGAACTGA ATGAAACTAA TCAATTAGGA
TATACGATTT CTTATGCCTA TGACGAAAAC GGTAACAGGA TTAGTGTTAC TAACGAAAAC
AGTAAGACTA CCAAACTTGC CTACGACGCC AATGGCAATA TCATTAAGAC AACTAATCCC
TTGGGCTACA GTAAATCAAT GACTTATGAC TCAAAAAATA ATCTGATTAG CCAGACTGAT
GAGTTGAGGC ATAAAACCTC TTTTGAATAC GATGATAATA GCAATCTTAT TAAGAGTATA
GACGCTCTTG GCCATGAGAC TGTTTTCAGT TATGACAAAT ATGGGCAAGT TATAGGCGAG
ACTGACTCCA ACAAAAAAAC CGCAACTTTT AGTTATAACA ATAACGGTGA TCAAATTACA
ATCACTGATG CTAATGGAAA AACTTCAGCC TTTACTTATG ATACTGTAGG CAGAGTAACT
ACCAAAACTG ATGCAAAAGG TAATAGATAT ACATTTCAGT ATGATGCCCT TGACAATCTC
CTAAGCATCA CCGATCCTAT GGGACAAACT ACAAGTAACA AATACGATGC TGCTGGAAAT
AAAATTAGTT TTACAGATGC TGAAGGTAGA TTAACAAAGT ATTCTTACGA CTCTTTAAAT
CAGTTAGTTA AAGTAACGAA TGCAATGGGT GGAGTAGTTA GGTACAAATA TGATGCCGTT
GGCAATCTGG TTTCCACGAC AGACGCAAAA GGGCATAAAA CAAGCTATGA TTACGATCCA
CTAAATCGCC AGGTCTCTGT TACTAATGCA TTAGGGAAAA CTACACGTAA CAAATATGAT
GCGATTGGCA ATAAAATTAG TATTACTAAT GCATATGGAA AGTCAACAAG GTATTCTTAC
AACTCCTTAA ATCAGTTAGT TAAAGTAACG AATGCAATGG GTAAAGTAGT TAGGTACAAC
TATGATGCTG TTGGAAATCT GATCTCCACA ACAGATGAAA ATGGGCATAA AATAAACTAC
GGTTACGATT CCCTAAATCG CCAGGTCTCT GTTACTGATG CATTAAGGAA AACTACACGT
AACAAATATG ATGCGGTTGG CAATAAAATT AGTATTACTA ATGCATATGG AAAGTCAACA
AGGTATTCTT ACAACTCCTT AAATCAGTTA GTTAAAGTAA CGGATGCAAT GGGTGGAGTA
GTTAGGTACA ACTATGATGC TGTAGGAAAT CTGATCTCCA CAACAGATGC AAATGGGCGT
AAAACAAACT ATGGCTACGA TTCCCTAAAT CGCCAAGTCT CTATTACTAA TGCATTAGGG
AAAACTACAC GTAACAAATA TGATGCGGTT GGAAACAAAA TTAGTTCTAC TGATGCAAAT
TGGAGATTAA CAAAATATTC TTACGACTCT TTAAATCGGT TAGTTAAAGT AACGGATGCA
ATGGGTGGAG TAGTTAGGTA CACCTATGAC GCCGTAGGAA ATCTGATCTC CACAACAGAT
GCAAAAGGGC ATAAAACAGA CTATGGTTAT GATTCATTAG ATCGTCAAGT TTCTATTACT
GATCCATTGG GAAGAACTGC ACGTAACAAA TATGATGCGG TTGGAAACAA AATTAGTTCT
ACTGATGAAG ATGGGAAGAC CACTTCTTAC GGTTATGATG TTTTAAATCG CCTAACAAAG
GTTTCCTACC CTGATGATCA AAAAGTGAGT TACAACTATG ATGCCGTAGG GAATCGCTTG
ACGATGAAAG ATAGCCATGG AACAACTGCA TATAAGTACG ATAAACTGAA TCGCTTGCTT
AGTGTTCTCA ACCCCGATGG CCAAAAAGTG AGCTACACGT ATAATAAAGT TGGGAATCGC
GTTAAAATGA CGTATCCTGA TGGCAAGACG ACTTCTTATT CTTATGATGC TGTCAATAGG
TTAATAGGTG TAATTGATTC GGATGGTCAT ATTACAAGTT ATTCTTATGC TAAAAATGGT
AATTTGAAAA CTATGAACAC TCCTAATGGG GTAAAGACAG AATATTCCTA TGATAAAGCC
AACAGATTGG TTGAATTAAT TAATAAAAAC ACAACTCAGG TTGTTTCAAG TTATAAGTAC
ACCCTGGATG CTGCAGGCAA TCGTTTAAAA GTTGATGAGC AACTTGCGGA AGGGGTCGAG
TCTGGAGATT CAGAGTTAAA AGAGTCACAG CTTTTGACTA CTACATATGG ATATGATAAG
CTCTATCGCT TAACCAAAGT CGATTATCCT TCTAACAAGA CTGTAAGTTA CAAATATGAC
TCTATGGGCA ATAGAATTAG CATGACTACA AATGTTGACG GGATCGGCTC GACTATTAGT
TACAAATATG ATGCTGCTGA TCAACTTTTG CAATCAGGGA ATATCTCTTA TTCATATGAC
AAAAAAGGAA ATCTAATAAA AAAGAGAGTA AACTCAACAC AGTTTATGTC TTACAGTTAT
GATGAGGCAA ATAGATTAAA AAATGTTTCC GAATTCGTAA GTAACACTAA TACTCCAAAA
TCTTCGTATA ATTTTGAATA TGATGGAGAC GGAAACCGCA TCATAAAAAC GACAATAAAC
GGCGAGAACG CACAGTCCAC CAAATATGTA TTGGACATCA ACAGCGCTTT ACCCCAGGTG
CTCACCGAAT CAGATACAAA AAACACAACC TGCTACACTT ATGGAACAGA CCTTATTTCC
ATGACCAATT CTGAAAACGC AGAATACTAT TACCATTATG ATGGACTGGG AAGTGTACGC
AGTCTCAGCG ACAGCAAAGG AATAATTAAA AATACTTACT TGTATGATGC TTTCGGACAG
GTACAGAAGG AAATAGGTAC AGTTGACAAT GAATTCCGTT TCACAGGGGA ACAAATGGAT
GATGAAACTG GGCTGATTTA TCTTAGGGCA AGGTATTATG ACCCTAGTGT TGGAAGGTTT
ATTACCAAGG ATGTAATCAA AGGTAGAAGG GTAACTACGC AGAGCATCAA TCGTTATGTG
TATACAACAA ATAACCCGGT AAATCTAGTC GATCTAACTG GTTATTGTGG AGATAAGGTA
AATAGTAGAA GTTCCAATCA AAGAGATACG TTTTCAGATT TATTAAATTT AGCTACTGAC
ATTATGCCTT TGTATCTTGA ATCGTTAGTA GTTCTTGGAA GACCAGAGAT TGCCACGACA
GGACAGCTTA ACCTTTGGGA AGGGGCTTTT TTAAATCAAA ATAACGATCT ACTGGATTAT
GCAGACAAAA TTGCAACTCC TATTAATTTA CTACAAGCTG CTTTCGATGC AGGTATAACC
CCAAAAGAAA TGGCCAACGT ATGGTTTAAT TCTCAGGAAA GGGATGAATC AATAAATTGG
TTGCTAGAAA ATCCTGATAA ACTGGGAGAT GTTTACAATG AATTTACTAC CGATTTTTAT
GCCACTGCTT CAAACGCTTT CTTGGAAGAT ACACGAATCG CTCCTGTTGT GTATTATGCT
ACACAAGGTC AGGTAGATTT ACGTATCACA GGAGAGGAGG TGAGAGAAAA CTTTGTGAAG
CCTATCTCAG ATGGACTAGC CGACTGGTTA TATTATCATA ATTTGTATTG A
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| Protein sequence | MKISRQIICS FIFIVFLMMI TGISAAENTN MSFVGHTGGW ISNVAVAENY AYVGEGQDFV
VLDIKDVNKP KEVGKVAISG LVGDIAISGN YAYITENISL VIVDISNPSL PKIVGSYSLT
NSLASGVTVS GNYAYVSCLR GFVALDISNP SMPTLVGRYT YNTYPASYTS DIIISGNYAY
VPFRNYGLHI VDISNQSSPT RIAMFDTINV VQVAISSNYA YATSGDNGLA IIDISNLSSP
TLVGSYNPTD ARPTGIAVSD NYAYIANANS GDNGFTVLDI TNVSSPKLVG KYATGSSDYV
TLSGNQAYVI NDQTGLAIIS IADKSSPTLL SSYNSIGGAR DVAVSGNYAY VADESKGLSV
IDITDPSLPR FADRYYNSGT TYAVAVSGNY AYLASGDNKL VIVDISNLSS LKFASSCYTG
YSFYSTDIDI VGTYAYIAYN GGIAIVDVAN PLLPKLISKY DVGDIVTGIA VEGDYAYIAD
NAGLIIVDIT NTSSPKLVGK YITGAITFDI AVAGNYAYIA NMVNGWNGIL VVDVTNRSSP
TLAGKISVPA EGISISDNCA YVSWFDGLYA VDITNPSSPI VVGHYGTAGV ASNSCTQDSY
VYVADERNGL VILKTDIQNP EPVPPKSDIP SSTYGSPSSN PNGAYSKEPV NLGTGSYFYQ
YQDLSIPGRG LPLTVSRSYN SMDNRSGLFG SGWTFNYNMN LTVDNNGNVT VLGGDGHTDT
YILNPDGTYS RPLSVFDDLI KNSDETYTLT KKDQTKYNFS SEGKLVNIVD KNGNQINFTY
TGEQLTKVTD ASGRELILAY DHNGHIISIT DPMGRVWSYS YDDQGNLIQC KNPIGGKLSY
TYDENHWMTS ITDPRGNHPM KNTYDEKGHV ISQSNSLNAT YTFNYDSENR KTTETDPFGK
NKTYSFDEHF WELNETNQLG YTISYAYDEN GNRISVTNEN SKTTKLAYDA NGNIIKTTNP
LGYSKSMTYD SKNNLISQTD ELRHKTSFEY DDNSNLIKSI DALGHETVFS YDKYGQVIGE
TDSNKKTATF SYNNNGDQIT ITDANGKTSA FTYDTVGRVT TKTDAKGNRY TFQYDALDNL
LSITDPMGQT TSNKYDAAGN KISFTDAEGR LTKYSYDSLN QLVKVTNAMG GVVRYKYDAV
GNLVSTTDAK GHKTSYDYDP LNRQVSVTNA LGKTTRNKYD AIGNKISITN AYGKSTRYSY
NSLNQLVKVT NAMGKVVRYN YDAVGNLIST TDENGHKINY GYDSLNRQVS VTDALRKTTR
NKYDAVGNKI SITNAYGKST RYSYNSLNQL VKVTDAMGGV VRYNYDAVGN LISTTDANGR
KTNYGYDSLN RQVSITNALG KTTRNKYDAV GNKISSTDAN WRLTKYSYDS LNRLVKVTDA
MGGVVRYTYD AVGNLISTTD AKGHKTDYGY DSLDRQVSIT DPLGRTARNK YDAVGNKISS
TDEDGKTTSY GYDVLNRLTK VSYPDDQKVS YNYDAVGNRL TMKDSHGTTA YKYDKLNRLL
SVLNPDGQKV SYTYNKVGNR VKMTYPDGKT TSYSYDAVNR LIGVIDSDGH ITSYSYAKNG
NLKTMNTPNG VKTEYSYDKA NRLVELINKN TTQVVSSYKY TLDAAGNRLK VDEQLAEGVE
SGDSELKESQ LLTTTYGYDK LYRLTKVDYP SNKTVSYKYD SMGNRISMTT NVDGIGSTIS
YKYDAADQLL QSGNISYSYD KKGNLIKKRV NSTQFMSYSY DEANRLKNVS EFVSNTNTPK
SSYNFEYDGD GNRIIKTTIN GENAQSTKYV LDINSALPQV LTESDTKNTT CYTYGTDLIS
MTNSENAEYY YHYDGLGSVR SLSDSKGIIK NTYLYDAFGQ VQKEIGTVDN EFRFTGEQMD
DETGLIYLRA RYYDPSVGRF ITKDVIKGRR VTTQSINRYV YTTNNPVNLV DLTGYCGDKV
NSRSSNQRDT FSDLLNLATD IMPLYLESLV VLGRPEIATT GQLNLWEGAF LNQNNDLLDY
ADKIATPINL LQAAFDAGIT PKEMANVWFN SQERDESINW LLENPDKLGD VYNEFTTDFY
ATASNAFLED TRIAPVVYYA TQGQVDLRIT GEEVRENFVK PISDGLADWL YYHNLY
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