| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A3242 |
|---|
| Symbol | |
|---|
| ID | 3627719 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 4159683 |
|---|
| End bp | 4160459 |
|---|
| Gene Length | 777 bp |
|---|
| Protein Length | 258 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 44% |
|---|
| IMG OID | 637702078 |
|---|
| Product | DNA-(apurinic or apyrimidinic site) lyase |
|---|
| Protein accession | YP_306703 |
|---|
| Protein GI | 73670688 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0708] Exonuclease III |
|---|
| TIGRFAM ID | [TIGR00195] exodeoxyribonuclease III
[TIGR00633] exodeoxyribonuclease III (xth) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 23 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.0851525 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCTGGTA ACTATAATCT CATTTCCTGG AATGTAAACG GTCTTCGGGC TGTAATGAAA
AAAGGTTTTC TTGAGCTTTT GCTGGAACAG AAATTTGATA TTGTCTGCAT TCAGGAAACT
AAAGTTTCTC CTGATAAACT CCCGAGAGAA GCAAAGAACA TTCCGGGCTA CTACAATTAT
TTTGTCTCCG CAGAAAAAAA CGGCTATAGC GGGGTTGGAC TCTTCTCCAA AAAAAAGCCC
CTGAAACTCG AAACCGGCAT GGGAATCGAA AAATTTGACA AAGAAGGCCG CTTCCTGCGG
GCCGATTTTG AGGATTTTAC CTTGATGAAT ATCTATTTCC CTAATGGCAA GGCCTCTCTG
GAACGCCTGG AATACAAAAT GAGTTTCTAC GAGGCTTTTT TAGACTATGC AAACTCTCTC
AAAGCCGAAG GCAAAAGACT TGTCATTTGC GGGGATGTAA ATACCGCCCA CAAAGAGCTC
GACCTTGCCC GCCCCAAGCA AAACGAAACG ATATCCGGTT TTCTCCCTGA AGAGCGTGCA
TGGATGGATA AATTCCTTGC TGCCGGTTAT CTTGACACCT TTCGTATGTT CAATCCTGAA
GGCGGAAACT ATTCCTGGTG GTCAATGAGA ACAGGAGCAC GTAAAAGAAA TGTAGGATGG
CGCCTGGACT ACTTTTTCGT AAGTGAAAAA CTGCGGGACA ATGTAAAATC TGCTCCGATT
TATAGTGAAA TTATGGGTTC GGACCACTGC CCTGTAGGAC TTGAACTCGA ATTTTAA
|
|---|
| Protein sequence | MSGNYNLISW NVNGLRAVMK KGFLELLLEQ KFDIVCIQET KVSPDKLPRE AKNIPGYYNY
FVSAEKNGYS GVGLFSKKKP LKLETGMGIE KFDKEGRFLR ADFEDFTLMN IYFPNGKASL
ERLEYKMSFY EAFLDYANSL KAEGKRLVIC GDVNTAHKEL DLARPKQNET ISGFLPEERA
WMDKFLAAGY LDTFRMFNPE GGNYSWWSMR TGARKRNVGW RLDYFFVSEK LRDNVKSAPI
YSEIMGSDHC PVGLELEF
|
|---|
| |