| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A2907 |
|---|
| Symbol | |
|---|
| ID | 3627229 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 3722628 |
|---|
| End bp | 3724106 |
|---|
| Gene Length | 1479 bp |
|---|
| Protein Length | 492 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 34% |
|---|
| IMG OID | 637701755 |
|---|
| Product | sensory transduction histidine kinase |
|---|
| Protein accession | YP_306385 |
|---|
| Protein GI | 73670370 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG3920] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | [TIGR00229] PAS domain S-box |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.00657144 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 6 |
|---|
| Fosmid unclonability p-value | 0.0001465 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGAGAGTG ATTTTTACAA AGAAAACATC GAGAAAATTG AAAAAAGATT CTTTTCCATA
GCTGAGATGA CAGGGCAATT AATATTTGAC AGTGATGCAC AGACAGGAAA GATTGAGTGG
TCAGGACCTA TTGAAGAGTT TACAGGTTAT ACTCAAGAAG AGTTCAGCAA AATTGATCTG
GCTGCCTGTA AAGAGGTGAT ACATCCAGAA GACAGAGAAA GAGTTTGGTG TGCTCTTGAG
AATTCTTTAA ATACAGGGGA GAAATTTTGG CAAAAATTCA GGTTTCGGAA AAAAGATGGA
AACTATATTT ATGTAGAGGA TAGTTCTGTT TTTCTCAAAG ACGAGAATGA CTGTGTATAC
AGAGGAATAG GCTTGCTTAA AAATATCATA GAAAATAAGT ATGCACAGGA AAAGCTCAAG
GTAAGCGAAG AACATATTCT AACATACCTG CAGAATTTCA GAGGTATTGG ATTTGAGTTA
GACAATAATT TCAATCTCAT GCTTCTTCAT GGAGCCGTAG AGGAAATTAC AGGCCATAGA
AATGAAGAAT TTTTATCAGG AAAAATCAGG TTGGTTCAGC TAGTATATCC TGAAGATCAA
AGTAATTTCC TTGAGAATCG AAAGAAACTG AACATTACAC CTAACTCTTT AATTGAACAA
GAATATCGAG TTCTGAACAG AAATGGAAAT ATAGTTTGGG TCTTTGAGTC TATCCATGTT
GTGCACGATA TAAATAAGAC AAACCAGTTT TATCAGGGGT TCATCCAAGA TGTGACTGAA
CAAAAAATTG CAAAGGAGGC TATTGACAAA GCCGAAAAAC TTCGTAAAAA AGAAATTCAC
CATCGAATCA AAAATAACCT GCAGGTAATA TCCAGCCTCT TAGAATTAGA GTGCGAAAAT
TTGCTGTCCG GTAACCTAGA ACGTGAAAAA GTTATTGAAG CATTTCGAGA AAGCAATAAT
CGAATCATAT CCATGTCTAT AATCCATGAA AAACTGTATA ACTCCAAAAA TATGGAAACA
ATCAATTTTG CTTCATACTT GAAAGAATTA ACAGATGATC TTTTCAAATC GTATAAAGTT
GGAAGTTCTG ATATCCAATT GCTTTTAGAT GTGGACGATA TCTGTTTTGA AATGGATAAT
GCAATCCCTT TAGGTATCAT TGTCAATGAA CTCGTTTCTA ATTCATTAAA GTATGCATTT
CCAGAAGTAG GAAGCGGGAA AATTCACATT AAACTTCACA GAGACGTTAA TGATAAAAAG
AAAATTTTGA CCACTCCTAA CAGAAATTTT ATGTTAATTG TTGAAGACAA TGGCATTGGT
TTTCCGGATT CAATTGACTT CAGAAACACT AGTTCACTGG GCTTACAGTT GGTAAATACT
CTTGTTGACC AAATCAATGG TGATATCGAA CTTATAAAAG ATTCAGGAAC AAAATATAAT
ATACGATTTA CAGATTCTTG GACCTGGATG TCTTCATGA
|
|---|
| Protein sequence | MESDFYKENI EKIEKRFFSI AEMTGQLIFD SDAQTGKIEW SGPIEEFTGY TQEEFSKIDL
AACKEVIHPE DRERVWCALE NSLNTGEKFW QKFRFRKKDG NYIYVEDSSV FLKDENDCVY
RGIGLLKNII ENKYAQEKLK VSEEHILTYL QNFRGIGFEL DNNFNLMLLH GAVEEITGHR
NEEFLSGKIR LVQLVYPEDQ SNFLENRKKL NITPNSLIEQ EYRVLNRNGN IVWVFESIHV
VHDINKTNQF YQGFIQDVTE QKIAKEAIDK AEKLRKKEIH HRIKNNLQVI SSLLELECEN
LLSGNLEREK VIEAFRESNN RIISMSIIHE KLYNSKNMET INFASYLKEL TDDLFKSYKV
GSSDIQLLLD VDDICFEMDN AIPLGIIVNE LVSNSLKYAF PEVGSGKIHI KLHRDVNDKK
KILTTPNRNF MLIVEDNGIG FPDSIDFRNT SSLGLQLVNT LVDQINGDIE LIKDSGTKYN
IRFTDSWTWM SS
|
|---|
| |