Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mbar_A2346 |
Symbol | |
ID | 3625331 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosarcina barkeri str. Fusaro |
Kingdom | Archaea |
Replicon accession | NC_007355 |
Strand | - |
Start bp | 2972750 |
End bp | 2973421 |
Gene Length | 672 bp |
Protein Length | 223 aa |
Translation table | 11 |
GC content | 35% |
IMG OID | 637701216 |
Product | di-trans-poly-cis-decaprenylcistransferase |
Protein accession | YP_305848 |
Protein GI | 73669833 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0020] Undecaprenyl pyrophosphate synthase |
TIGRFAM ID | [TIGR00055] undecaprenyl diphosphate synthase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 9 |
Plasmid unclonability p-value | 0.0014458 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 13 |
Fosmid unclonability p-value | 0.0426929 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGGGGGATT TTCTGGATAT ACCAAAATTC AAAAGATTGC CAAGACATGT TGCTATAATA CCAGATGGTA ACAGAAGATG GGCAATGGCT AGAGGCTTAG AAAAGCATGA AGGATATGAT AATGGAGTAA TTCCAGGCCT GAAAGTATAT GATATATGCG TAAAGATAGG AATAGACGAA GTTACTTTTT TTGGATTTAC CCAAGATAAC ACAAAAAGGC CTCAAATTCA AAGAAAGGCA TTTGTAGATG CCTGTATAAA ATCAGTTCAA GAAATATCTA AACGTGATGC TGAAATACTT GTAGTAGGGA ATACTGACTC TACCATATTT CCCAAAGAGT TACTTGCATA TACAAAGAGA ACAAAAGTTG GAAAAGGCAA AATAAAGATA AATTTTTTGA TAAATTATGG TTGGTATTGG GATTTAGCAT ATGCGTTTGA TAACTCCTCA GATAGTAAGA AAATTGTAGA AAACATTGCA TCAGCAGAAA TTCCAAGAAT AGATTTACTT ATTCGCTGGG GAGGAAGGCG CAGACTCAGT GGAATGCTTC CAGTTCAAAC GGTGTATTCA GACATATATG TAGTCGATGA AATGTGGCCA GATTTTAAGC CAGAACACTT ATTTAATGCA CTAGAATTTT ATCAAGAACA GGATATTACA TTGGGTGGGT AA
|
Protein sequence | MGDFLDIPKF KRLPRHVAII PDGNRRWAMA RGLEKHEGYD NGVIPGLKVY DICVKIGIDE VTFFGFTQDN TKRPQIQRKA FVDACIKSVQ EISKRDAEIL VVGNTDSTIF PKELLAYTKR TKVGKGKIKI NFLINYGWYW DLAYAFDNSS DSKKIVENIA SAEIPRIDLL IRWGGRRRLS GMLPVQTVYS DIYVVDEMWP DFKPEHLFNA LEFYQEQDIT LGG
|
| |