Gene Mbar_A2346 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMbar_A2346 
Symbol 
ID3625331 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosarcina barkeri str. Fusaro 
KingdomArchaea 
Replicon accessionNC_007355 
Strand
Start bp2972750 
End bp2973421 
Gene Length672 bp 
Protein Length223 aa 
Translation table11 
GC content35% 
IMG OID637701216 
Productdi-trans-poly-cis-decaprenylcistransferase 
Protein accessionYP_305848 
Protein GI73669833 
COG category[I] Lipid transport and metabolism 
COG ID[COG0020] Undecaprenyl pyrophosphate synthase 
TIGRFAM ID[TIGR00055] undecaprenyl diphosphate synthase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.0014458 
Plasmid hitchhikingNo 
Plasmid clonabilitydecreased coverage 
 

Fosmid Coverage information

Num covering fosmid clones13 
Fosmid unclonability p-value0.0426929 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGGGGATT TTCTGGATAT ACCAAAATTC AAAAGATTGC CAAGACATGT TGCTATAATA 
CCAGATGGTA ACAGAAGATG GGCAATGGCT AGAGGCTTAG AAAAGCATGA AGGATATGAT
AATGGAGTAA TTCCAGGCCT GAAAGTATAT GATATATGCG TAAAGATAGG AATAGACGAA
GTTACTTTTT TTGGATTTAC CCAAGATAAC ACAAAAAGGC CTCAAATTCA AAGAAAGGCA
TTTGTAGATG CCTGTATAAA ATCAGTTCAA GAAATATCTA AACGTGATGC TGAAATACTT
GTAGTAGGGA ATACTGACTC TACCATATTT CCCAAAGAGT TACTTGCATA TACAAAGAGA
ACAAAAGTTG GAAAAGGCAA AATAAAGATA AATTTTTTGA TAAATTATGG TTGGTATTGG
GATTTAGCAT ATGCGTTTGA TAACTCCTCA GATAGTAAGA AAATTGTAGA AAACATTGCA
TCAGCAGAAA TTCCAAGAAT AGATTTACTT ATTCGCTGGG GAGGAAGGCG CAGACTCAGT
GGAATGCTTC CAGTTCAAAC GGTGTATTCA GACATATATG TAGTCGATGA AATGTGGCCA
GATTTTAAGC CAGAACACTT ATTTAATGCA CTAGAATTTT ATCAAGAACA GGATATTACA
TTGGGTGGGT AA
 
Protein sequence
MGDFLDIPKF KRLPRHVAII PDGNRRWAMA RGLEKHEGYD NGVIPGLKVY DICVKIGIDE 
VTFFGFTQDN TKRPQIQRKA FVDACIKSVQ EISKRDAEIL VVGNTDSTIF PKELLAYTKR
TKVGKGKIKI NFLINYGWYW DLAYAFDNSS DSKKIVENIA SAEIPRIDLL IRWGGRRRLS
GMLPVQTVYS DIYVVDEMWP DFKPEHLFNA LEFYQEQDIT LGG