| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A1977 |
|---|
| Symbol | |
|---|
| ID | 3627952 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 2470612 |
|---|
| End bp | 2471490 |
|---|
| Gene Length | 879 bp |
|---|
| Protein Length | 292 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637700855 |
|---|
| Product | oligopeptide ABC transporter, permease protein |
|---|
| Protein accession | YP_305491 |
|---|
| Protein GI | 73669476 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 23 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAACACT CATACTTTGA CGAAAAACTG GCAGTTTCCG AAATGAAAAG AGTATGGGGA
GTTTTGCGGA GCAATATAAC GCTTACAATA GGAGTTCTGC TGTTTATTCT TATCTCCATG
ATGGCTGTAA CGGCTTCGGC GATTTCCCCG CATGACCCTG CAGAGATGCA TCTTGAAGAA
AAGTTATCTC CTCCATCGGC ATCTTTTCCT CTTGGGACGG ACCATTTTGG AAGGTGTATT
TTCAGCCGTA TATTATATGG TGCACAGACT TCATTCTTCA TTGCGGTTAT TTCAACTCTA
ATTATCGTGC CTGCAGGAAT TATCATAGGA ATGTATGCAG GTTATTTCAG TAGGTGTGAT
GCTTTCTTGA TGCGATTGGC AGATATCTTT CTTGCCTTCC CCAGTATAGT TCTTTCAATT
GCGATTGTGG GAGTTGTAGG CCCAAGTCCT GCAGGAATTA TTCTATCTCT TTCCATTCCT
GGCTGGGCAA AATATGCACG ATTAATCCGG GGATCCACTC TCTCACTGAA AAATAGCGGA
TTCGTCGAGG CAGCCAGGGC AATTGGAGCA TCTGATAAAT ACATTCTTTT CCACCATATT
CTTCCCAACA GTTATGGACC TATTATTGAG ATTGCAACTC TTGGGTTAGG ATCCAAGATT
ATTTCAATTT CCGGTCTTGG ATTTTTAGGG CTTGGAATTC AGCCTCCTAC CCCGGAACTG
GGAACAATCC TGAAAGATGG ACTTGTATAT CTTCAGACTG CTCCTATGAT GGCTTTATCT
TCAGGAGGCA TGATCATGCT GTTTGTTCTT GCGGTAAATC TCATCGGTTC CGAACTGAGA
TCGATTACTG ATCCCCGGTC TGATACGATA GAATTTTAA
|
|---|
| Protein sequence | MEHSYFDEKL AVSEMKRVWG VLRSNITLTI GVLLFILISM MAVTASAISP HDPAEMHLEE
KLSPPSASFP LGTDHFGRCI FSRILYGAQT SFFIAVISTL IIVPAGIIIG MYAGYFSRCD
AFLMRLADIF LAFPSIVLSI AIVGVVGPSP AGIILSLSIP GWAKYARLIR GSTLSLKNSG
FVEAARAIGA SDKYILFHHI LPNSYGPIIE IATLGLGSKI ISISGLGFLG LGIQPPTPEL
GTILKDGLVY LQTAPMMALS SGGMIMLFVL AVNLIGSELR SITDPRSDTI EF
|
|---|
| |