| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A1889 |
|---|
| Symbol | |
|---|
| ID | 3624290 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 2355632 |
|---|
| End bp | 2358496 |
|---|
| Gene Length | 2865 bp |
|---|
| Protein Length | 954 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637700770 |
|---|
| Product | P-type copper-transporting ATPase |
|---|
| Protein accession | YP_305409 |
|---|
| Protein GI | 73669394 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG2217] Cation transport ATPase
[COG2608] Copper chaperone |
|---|
| TIGRFAM ID | [TIGR00003] copper ion binding protein
[TIGR01494] ATPase, P-type (transporting), HAD superfamily, subfamily IC
[TIGR01511] copper-(or silver)-translocating P-type ATPase
[TIGR01525] heavy metal translocating P-type ATPase |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 14 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGAAGTTA CTATAAAAGT TTATGACATG ACCTGTGGTC ACTGCCAAAA AAGAGTGGCA
GATGCCATTT CATCTCTTGA GGGGGTAGAA TCCGTTGACG TAAACCTTGA ATCCGAAAGT
GCAACGGTTA GCTTTGATTC TGAAAAAGTA AGCCTTGATG ACATAAAGGC AGCTATTCAG
AAGGCAGGAT ACCCAACAGA AAGTGAAAAC GAGGTTCAGG AAGAGGCCGG GGCAGAAGTT
CCCGAAATAA CAGAGGCCGA AGGGGAGACT TCAAAAACTG CGGAGCCAAC TTTAAAGGAA
CCAAAGGAAC CTGAAGAAGC TCCTAAAACC TGTCCCCTGA CTGAAACTTG CGCACTGCCT
GAAGAGGAAC CTCAAACCTT AGGCCTGAAA ACCGGTCGAA AAGAAATAAC GCTTGGAGTG
TCCGGTATGA CCTGTTCGGC CTGCGCCTCA AATATTGAGA GAGTACTGAA GAAAAAAGCA
GGCGTGGACT CAGCAGTTGT CAACCTTGAA CTTGGAAGGG CAAATGTTAG TTTTGATCCC
TCACTTATCT CTCCGAAAGA AATAGGGGAA ACCATCGAGT CTATCGGATA TAAGGTAGAA
AAAGATTCCG TAACTCTGAG TCTTGAAGGT ATGAGCTGTG CCTCTTGTGC TGCAAATATC
GAGAAAGTCC TTAACAGGAC TGAAGGCGTG ATTTCAGCGT CTGTAAATTT CCCGCTTGAA
AAGGCAGTTG TAGAGTTTGA CTCCTCCCGC GTCTCTGTCA GAGAAATAAT TGCTGCAGTT
CAGGGAATTG GCTATGGAGC ATTTGTTAAA ACCGAAGCTG TTGAGTATGA AGACAGAGAG
CAGATGTCCA GAGACGCTGA AATCAGGAGG CAGAGAAATA ACCTGATAAT TGCTCTTGTT
CTGGGAATTC CAATAGGGCT GGGAAACATG AGTATGATGT TTCCTTTCCT GTCTTTTGTA
CCTGATTTCC TTTCCAATCA TATCGTCCTT TTTATACTAT CTACTCTTGT CCTCCTTTTC
CCTGGCAGAC AATTTTTTGT AGGGACTATT AGGGGGTTCA AATATGGCGT AACTGACATG
AACCTGCTGA TCGCAGCAGG GACAGGATCA GCCTATCTTA TCAGTGTAGC AGCCACATTT
CTTGATCTTG GCCCTGGGTA TAATAGTCTG TATTATGACA CCGTAGCTTT CCTGATCATC
TTCATTGTCC TTGGCAGGTA TCTCGAGGCA AGGGCAAGGG GTCAAACCTC TGAAGCAATT
AGAAAACTGA TGGGCCTCAG GGCAAAAACT TCCAGAATCC TTGTAAATGG CATTGAAAAA
GAGATTCCTG TCGAAGAAGT AGCAGTTGGC GACATTGTTG TTGTAAGGCC TGGAGAAAAA
ATTCCTGTTG ATGGAATTAT AGTTGAGGGA GGCTCTGCAG TAGATGAGTC CATGCTCACT
GGAGAAAGCA TTCCTGTAGA AAAATTTCCG GGTGATACCG TTATAGGAGC TACTCTTAAC
AAGACAGGAT CTTTTAATTT TCGAGCTACA AAAGTCGGGG CTGATACTGC CCTTGCTCAG
ATAATCAGGC TTGTTGAGAC TGCGCAGACT ACAAAAGCTC CCATTCAGAG AGTTGCAGAT
GTTGTTGCCG GAAACTTCAT AGTAACCGTA CATATTATTG CGCTTCTGGC ATTTTTCTTC
TGGTTCTTCA TAGGTTACTG GCGCTATGGA GTCGGGGAAT CCGTAACTCT AGGTGGAATC
AGCCCATTCC TGTTTTCCTT GCTTATAGCC ATTACTGTGC TTGTAATCTC GTGCCCATGT
GCAGTCGGGC TTGCAACTCC TGCCGCTATT ATGGTCGGTA CCGGTCGAGG TGCGGAAAAC
GGGGTCCTTA TAAAAGGTGG GGAAGCTCTT GAAAGAGCGC ATAAACTTGA TACTATCGTT
TTTGACAAAA CAGGCACGCT TACGGCAGGT ACTCCGAAGC TGACAGATTT AGTTGCCGTT
TCCGGTCACG AGGAAAAAGA CGTACTTTTT ATTGCAGCAA CGGCTGAGAG AGGCTCCGAG
CATCCCCTTG GGGAAGCTAT TGTAAACGGG GCCGAAGAAC AGGGGATCAG GCCAGGAAAA
GCAGAAAATT TCCATTCGAT TCCCGGAAAA GGAGTAGAAG CCTATTTTGA AGAAAAAAGA
ATTTTGCTTG GCACGCGCAA ACTTATGGAA GAAGAAGGAT TTTCCTTTAA AGAATTAGAA
GCTGAAATGC GAGCTTTTGA AGAGAGCGGA AAAACTGCAA TGCTCGTAGC TTTCGGGGAA
GAAATTATTG GTCTTGTTGC AGTTGCTGAT ATCCTGAAGG AAAACTCCAT AGAAGCTATT
GAAACTCTTA ACAAAATGGA TCTAGAAGTA GTTATGATCA CAGGTGATAA TGCCGTTACA
GCTAATGCAA TAGCAAAAGA GGTAGGTATT CCAAGAGTGC TGGCCGAGGT GCTTCCTGAA
GACAAAGCAA GTGAAATTAA GAAGCTTCAG GAAGAGGGCA AGCTTGTCGG AATGGTGGGT
GACGGCATTA ATGATGCCCC TGCGTTAATT CAGTCCGATG TCGGAATTGC AATGGGAGCA
GGTACAGATG TAGCAATGGA ATCCGCAAAA ATTGTGCTTA TCAAAAATGA CCCAAGAGAT
GTGGTCTCAG CCATTAAGCT GAGCCGGCTT ACCATAAACA AAATTAAACA GAACCTGCTA
TGGGCTTTTG GATATAATAC GATAGGAATT CCAATTGCAG CCGGAATTCT TTATCCCTTT
ATTCACAGGG TCCTGATTAC ACCTGAATTT GCTGCCGCTT TCATGGCTCT AAGTTCGGTC
TCAGTGACTA CCAATTCCCT GTTAATGAAA AGAAGTAAGC TTTAA
|
|---|
| Protein sequence | MEVTIKVYDM TCGHCQKRVA DAISSLEGVE SVDVNLESES ATVSFDSEKV SLDDIKAAIQ
KAGYPTESEN EVQEEAGAEV PEITEAEGET SKTAEPTLKE PKEPEEAPKT CPLTETCALP
EEEPQTLGLK TGRKEITLGV SGMTCSACAS NIERVLKKKA GVDSAVVNLE LGRANVSFDP
SLISPKEIGE TIESIGYKVE KDSVTLSLEG MSCASCAANI EKVLNRTEGV ISASVNFPLE
KAVVEFDSSR VSVREIIAAV QGIGYGAFVK TEAVEYEDRE QMSRDAEIRR QRNNLIIALV
LGIPIGLGNM SMMFPFLSFV PDFLSNHIVL FILSTLVLLF PGRQFFVGTI RGFKYGVTDM
NLLIAAGTGS AYLISVAATF LDLGPGYNSL YYDTVAFLII FIVLGRYLEA RARGQTSEAI
RKLMGLRAKT SRILVNGIEK EIPVEEVAVG DIVVVRPGEK IPVDGIIVEG GSAVDESMLT
GESIPVEKFP GDTVIGATLN KTGSFNFRAT KVGADTALAQ IIRLVETAQT TKAPIQRVAD
VVAGNFIVTV HIIALLAFFF WFFIGYWRYG VGESVTLGGI SPFLFSLLIA ITVLVISCPC
AVGLATPAAI MVGTGRGAEN GVLIKGGEAL ERAHKLDTIV FDKTGTLTAG TPKLTDLVAV
SGHEEKDVLF IAATAERGSE HPLGEAIVNG AEEQGIRPGK AENFHSIPGK GVEAYFEEKR
ILLGTRKLME EEGFSFKELE AEMRAFEESG KTAMLVAFGE EIIGLVAVAD ILKENSIEAI
ETLNKMDLEV VMITGDNAVT ANAIAKEVGI PRVLAEVLPE DKASEIKKLQ EEGKLVGMVG
DGINDAPALI QSDVGIAMGA GTDVAMESAK IVLIKNDPRD VVSAIKLSRL TINKIKQNLL
WAFGYNTIGI PIAAGILYPF IHRVLITPEF AAAFMALSSV SVTTNSLLMK RSKL
|
|---|
| |