| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A1796 |
|---|
| Symbol | |
|---|
| ID | 3625158 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 2226051 |
|---|
| End bp | 2227544 |
|---|
| Gene Length | 1494 bp |
|---|
| Protein Length | 497 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 45% |
|---|
| IMG OID | 637700678 |
|---|
| Product | outer membrane protein |
|---|
| Protein accession | YP_305317 |
|---|
| Protein GI | 73669302 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG1520] FOG: WD40-like repeat |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 1 |
|---|
| Plasmid unclonability p-value | 0.0000000580169 |
|---|
| Plasmid hitchhiking | Yes |
|---|
| Plasmid clonability | hitchhiker |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAATAAGA ATATAAAAAT AAGATTTATT CCAGTTATTC TGTTTTTTCT GTCCATTTTA
TTACTTTCCT CAACAACCAT GGCTTCCAAT AATACTGATA CTTGGAGCCA GTTCCATAAA
GACACTGCAA ACGCCGGCTT CTCCTCAGGG GGAGCTCCGG ATACTGAAAA ACTGCTCTGG
GTAAGCGACC CTATCTGGGC GATTCCCAGC TCTTCACCTG TAATTGCGGA TGGGAAGGTT
TTTATCAAGT GTGGAGTAGA TCACGCTCCC GATTCGATGT CAACAAATCC CGATGAATTA
AGGATAGTGA CCATTGATGA ATTTACGGGA AATGTAATTT CTTCCGATGA AATAGGTCTG
GTTTCACCCG GATGGGGATC TCTCTGTTAT GAAAATGGAA AGATATGGTA TGGACAGGCG
GAAGCTCTCA ATGGTGGGGC AATGGTTGCA GATGGGAAAG TATTTGACAG TGATGGTTTC
TCTCACCATT ATTGCTGTAC TGATGCAGAA ACTGAAGAAG AACTCTGGAA CTTTACAGTT
ACCGGAGTTG CAATCGGCAC ACCGGCATAT TATGGAGGTA AGGTTTACCT AACAAGCGGA
CCGCTCTTTA GTTCTCCGGG ACACGTTTAC TGTATCGATC CCGATAGTGG GAACGAGATC
TGGAACCAGA CACTCCCTTA CGAGGCAGGT GGGTCTCCTG CTGTCTCTGA GGGTGTTGTC
TATGCAACTA CTTACGATGG AAAGCTTTAC GCGCTGGATG CCGAAGACGG GTCAATCCTC
TGGAATGCAA CTGTTCCAAG TACCGATGTT TCATCTACCC CGGCAATTGC TTATGGTAAT
ATCTACATTT CGGGTGGATG TCCCGGATTT AGCACAATTG AAACCTACTG CTTCAACGCA
ACAACTCATG AACTGGTCTG GAATACTTCT GCCGAAGATA AGATAGGAGG CTGGACCACA
TCAGTTGCTG TTGCAGATGA TATGGTCTTT GTAGGAAAAT ACGCCGAAGA TGATTACTTC
GGATACGCCG GCACATATGC TCTCGATGCT CATACAGGGG ATGTAATCTG GAGTTATCCC
CACGGAGGCT CTTCACCTGC AATTTCCGAC GGGATAGTTT TCACAATTGG AGCTGATGGA
AGAGTTTATG CCTTTGCTGA TTCTGAGGAA GTTTTGCCAG CTGTTTCTAT CAAGTGTAAT
ACGTCCAGTC TTGACTTTGG AACTCTGGCT TCTGGAAATA AAAGTATTTT ACACCTGAAT
ATCACGAATG CCGGGAGCTC TAATGTAACT ATTTCAGCCG AACCTGAAGA AGGCAATACC
CAATTATACA ATGATACGCT CTTTTTCGGC TCCACTTTCT GGAACCAGTA TTCAAAGCTG
ATCTCAAGCC AAAAGACGGA AGAACTGAAA CTCGTGCTGG ATGTGCCTGA TGGATACGAA
GGAGAGCTGA ATAAAGAAAA AGGAAATTTG ATTTTCTGGG GGGAGTCTGT ATAA
|
|---|
| Protein sequence | MNKNIKIRFI PVILFFLSIL LLSSTTMASN NTDTWSQFHK DTANAGFSSG GAPDTEKLLW
VSDPIWAIPS SSPVIADGKV FIKCGVDHAP DSMSTNPDEL RIVTIDEFTG NVISSDEIGL
VSPGWGSLCY ENGKIWYGQA EALNGGAMVA DGKVFDSDGF SHHYCCTDAE TEEELWNFTV
TGVAIGTPAY YGGKVYLTSG PLFSSPGHVY CIDPDSGNEI WNQTLPYEAG GSPAVSEGVV
YATTYDGKLY ALDAEDGSIL WNATVPSTDV SSTPAIAYGN IYISGGCPGF STIETYCFNA
TTHELVWNTS AEDKIGGWTT SVAVADDMVF VGKYAEDDYF GYAGTYALDA HTGDVIWSYP
HGGSSPAISD GIVFTIGADG RVYAFADSEE VLPAVSIKCN TSSLDFGTLA SGNKSILHLN
ITNAGSSNVT ISAEPEEGNT QLYNDTLFFG STFWNQYSKL ISSQKTEELK LVLDVPDGYE
GELNKEKGNL IFWGESV
|
|---|
| |