| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A1792 |
|---|
| Symbol | hemD |
|---|
| ID | 3625154 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 2208474 |
|---|
| End bp | 2209265 |
|---|
| Gene Length | 792 bp |
|---|
| Protein Length | 263 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637700674 |
|---|
| Product | uroporphyrinogen-III synthase |
|---|
| Protein accession | YP_305313 |
|---|
| Protein GI | 73669298 |
|---|
| COG category | [H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG1587] Uroporphyrinogen-III synthase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.156972 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 0.974342 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGCAGAAG AAAAAAGGCC TGTTCTCGCA ATTATGAGGC CGGAAAGCTA CAGGGAAAAA
TCAGAGGCTC TTGCGCAAGA TTATGGTTTT GAGCCTTTAT ACGTTCCTAT GATTCGGCTT
GAAGGCATAA AAGATGAAGG TTTTGAGCCC TTTATCCGAA GAGTCCTTAC AGGATCTTCG
GATTATGTTG TTTTTACCAG TGCAAACGGA ATAAGTTTTA CTCTGGACAA GCTCTCTGAA
ACTGAAAAGA AGGATTTCAT TACAGCGCTT AAAAAAATCA AGGTAATTGC CATCGGGCCT
AATACGGAAA AGGAACTCAT AAAGATAGGA ATTGACAACT CATTTTTGCC GGGAGATTAT
AGCTCCAAAG GAATTGTAGA AGCTCTCTGC CCCGAGGTGG CAGGAAAGAC GGTAGACCTT
GCCAGGAGTG CTTTTGGGGC TAAGGTCTTA ATAGAAGGGC TTGAAAAGTG TGGAGCTACG
GTTTATGAGA CTCACGTGTA CACTCTCAGC ATTCCTGAAG GAACGATCCA GAAAGATTTG
ATAGAGCGCA CGCTCGCAGG GGAAGTGGAT GCTTTTGCTT TTACAAGTTC GATGATGGTT
AAAGGCTTTA TGAAACATGC AAAAGGGCTG GGAGCAGAGG AAACCATAAA AGAATCTCTC
AGCAGGGCTG TGGTAGGAGC TATAGGAACG CCTACAGGAA ATACCCTGAA CAAATATGGT
GTCAATGCGA ACGTAATCCC TGAAGAGTTT ACTTTCGAAG CTCTGATAAA GGCTATGAAA
AAAGAGCTAT GA
|
|---|
| Protein sequence | MAEEKRPVLA IMRPESYREK SEALAQDYGF EPLYVPMIRL EGIKDEGFEP FIRRVLTGSS
DYVVFTSANG ISFTLDKLSE TEKKDFITAL KKIKVIAIGP NTEKELIKIG IDNSFLPGDY
SSKGIVEALC PEVAGKTVDL ARSAFGAKVL IEGLEKCGAT VYETHVYTLS IPEGTIQKDL
IERTLAGEVD AFAFTSSMMV KGFMKHAKGL GAEETIKESL SRAVVGAIGT PTGNTLNKYG
VNANVIPEEF TFEALIKAMK KEL
|
|---|
| |