Gene Mbar_A1088 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMbar_A1088 
Symbol 
ID3627363 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosarcina barkeri str. Fusaro 
KingdomArchaea 
Replicon accessionNC_007355 
Strand
Start bp1334426 
End bp1335898 
Gene Length1473 bp 
Protein Length490 aa 
Translation table11 
GC content47% 
IMG OID637699979 
Product7-cyano-7-deazaguanine tRNA-ribosyltransferase 
Protein accessionYP_304636 
Protein GI73668621 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0343] Queuine/archaeosine tRNA-ribosyltransferase 
TIGRFAM ID[TIGR00432] tRNA-guanine transglycosylase, archaeosine-15-forming
[TIGR00449] tRNA-guanine transglycosylases, various specificities 


Plasmid Coverage information

Num covering plasmid clones38 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones27 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCAGCAA TATTCGAAAT ACTCGACAAG GATGCAGGCG GAAGGATAGG AAGGCTCAGG 
ACTCCCCATG GGACTGTTGA GACGCCTACC GTTATGCCTG TGATTAATCC AAATATCCAG
CTAATTCCCC CGAAAGAAAT GCGAAACTTC GGGGCAGAGA TTCTGATTAC TAATTCCTAT
ATTATTTACC GCAAGGAAGA ACTGAAAAGT GTCGCCCTGG AAAAAGGGTT GCATGGGCTC
CTGGGCTTTG ACGGGCCCAT TATGACGGAT TCGGGTTCTT TCCAGCTTTC TGTATATGGA
TCCGTCGAAG TTACGAATGA AGAAATTCTC GGGTTCCAGC AAAAGATAGG AAGCGACATT
ATTGTCCCGC TGGACATCCC TACGCCCCCT GATGTCCACT ACCGACGGGC TGAAGAGGAA
CTTGCAATCA CAGCTGAACG CCTTGAAGCG GCACGCAAGT TTATCCAGAG TGAACAGCTT
CTTGCAGGGC CAGTTCAGGG TTCAACCTAT CCTGAACTGA GGGAAAAAGC TGCTTCCCAC
CTGAAAGACC TTAATTTTGA AGTTTATCCC CTTGGAGCAG TTGTCCCGCT CATGGAAGCC
TACCGTTATG CGGAACTTGT TGATGTTATT GCTGCGTCTA AAAAAGGGCT CTCTCCGGCT
TCTCCGGTCC ACCTTTTCGG GGCAGGTCAT CCAATGATGT TTGCCCTTGC AGTAGCCATG
GGCTGTGACC TTTTTGATTC GGCAGCCTAC GCCCTTTACG CCAAAGATGG GCGCTATATT
ACTGTAAATG GAACCTATCA TGTGGAAAAA CTAAACTATC TGCCCTGTTC CTGTCCGGTC
TGTTCAAAGT ACACGGCAGA AGAATTGAAA AAAGCCGATA ATCGGGAAGA ACTTCTGGGA
AAACATAACC TTTACGCGAC CTTTGCTGAA ATCCGGTTGA TTAAGCAGTG CATAAAAGAC
GGGAAATTGC TTGAACTTGT GGAGCAGCGC TGTCGTGCTC ATCCAAAACT TCTGGATGGG
TTGAAGAAGC TTTACACTCA TTCTTCCTGG CTTGAGCAGC TTGATCCGGC TACAAAAGGT
ACCTTCTTCT ACTGTGGACC TGAGTCCTCC TCCCGCCCTG AAATCCTGCG TTTTGGAAAA
CGGCTGGATA GGTTCAGCCT GCAAGGCTCA GTAATTATTC GGACAGGATC AGTCAAAGGA
GAGAAAGATT ACGACCAGAT TCTTACTTTC AAAGCACCTT TTGGAGCGTT TCCTGTCGAA
ATGGAAGAAG TGTATCCTTT CAATGCTGAA GTCCCAAAAT TTCCGGATTA CGAATCACTC
AATACAGCTC TTTCAAACAC TCTTAAACTG ATAGACCTGA ACCCGGAAGC AGAGTTTACT
TTTATTTGCG AGGAGGAGTT CAAGCACCCT CTAATCGAAG AAATCAGAAA AAGGGCAAAA
CTGGTATACA GGAAAGATTG GAAAAAAGAA TAA
 
Protein sequence
MSAIFEILDK DAGGRIGRLR TPHGTVETPT VMPVINPNIQ LIPPKEMRNF GAEILITNSY 
IIYRKEELKS VALEKGLHGL LGFDGPIMTD SGSFQLSVYG SVEVTNEEIL GFQQKIGSDI
IVPLDIPTPP DVHYRRAEEE LAITAERLEA ARKFIQSEQL LAGPVQGSTY PELREKAASH
LKDLNFEVYP LGAVVPLMEA YRYAELVDVI AASKKGLSPA SPVHLFGAGH PMMFALAVAM
GCDLFDSAAY ALYAKDGRYI TVNGTYHVEK LNYLPCSCPV CSKYTAEELK KADNREELLG
KHNLYATFAE IRLIKQCIKD GKLLELVEQR CRAHPKLLDG LKKLYTHSSW LEQLDPATKG
TFFYCGPESS SRPEILRFGK RLDRFSLQGS VIIRTGSVKG EKDYDQILTF KAPFGAFPVE
MEEVYPFNAE VPKFPDYESL NTALSNTLKL IDLNPEAEFT FICEEEFKHP LIEEIRKRAK
LVYRKDWKKE