| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A0928 |
|---|
| Symbol | |
|---|
| ID | 3627308 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 1122304 |
|---|
| End bp | 1123128 |
|---|
| Gene Length | 825 bp |
|---|
| Protein Length | 274 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 43% |
|---|
| IMG OID | 637699817 |
|---|
| Product | oligopeptide ABC transporter, permease protein |
|---|
| Protein accession | YP_304481 |
|---|
| Protein GI | 73668466 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.00180433 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | decreased coverage |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 28 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCACGAGA AGAGTATTTC ACAGCGATTA AAAACTCCAA AAGGTATTGC AGGCCTTATA
ATTCTAGTCT TTTTTATTTT TATGGCTGCT ACTGCATCTC TTCTGGCTCC TTATGGGCCT
ACTGATTTAT CAAGTCAGCC TTTGCTCCCT CCAGATGATG CTCACCCACT TGGTACAGAT
GACGTGGGAA AAGACATATT CACAGAGCTT TTGTATGGCT CAAGGACTTC ACTTACAGTT
GCTTTTGTTG TATCGTTTGG AGTGCTGGTA ATCGGTACTT TTATAGGAGT ATTTTCAGGA
TATATGGGCG GAATCTCTGA TAGGGTACTT ATGAGAGGAG TTGATATTTT TCTCATGATC
CCTGAACTTC CTCTCATTCT CATTCTTGCA GCATACTTGC GCCCAAGCAT ATGGAATATT
ATATTCATTC TTATACTCTT AGGCTGGCCT GTAGGTGCAA GGGTTACAAG GGCTCAGACT
CGGACTCTCA GGGTATCTGG ACATGTAGAT TTCGCAAGGG TTTCCGGGGC TACAGCCCCT
TATGTAATCA GGAAACATAT TGTTCCAGAT TTATACCCAA TCGTGGTCAC TACATTAGTA
ATGCAGTCTA TCCGTGCTAT TTTGTCAGAG TCAGGCCTTG CTTTTCTGGG ACTTGGAGAC
CCTTCTTATC CAAGCTGGGG GAGCATGATA AAATATGCAA TATCATATCC AATGATATTT
TTCTCAGATG CATGGATGTG GTGGCTGCTG CCTGCAGGGA CATGTATAAC ACTGCTTGTG
CTGGGATTCG TACTTCTGGG ACAGTCTCTG GAAGGTGATT ATTGA
|
|---|
| Protein sequence | MHEKSISQRL KTPKGIAGLI ILVFFIFMAA TASLLAPYGP TDLSSQPLLP PDDAHPLGTD
DVGKDIFTEL LYGSRTSLTV AFVVSFGVLV IGTFIGVFSG YMGGISDRVL MRGVDIFLMI
PELPLILILA AYLRPSIWNI IFILILLGWP VGARVTRAQT RTLRVSGHVD FARVSGATAP
YVIRKHIVPD LYPIVVTTLV MQSIRAILSE SGLAFLGLGD PSYPSWGSMI KYAISYPMIF
FSDAWMWWLL PAGTCITLLV LGFVLLGQSL EGDY
|
|---|
| |