Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | Mbar_A0928 |
Symbol | |
ID | 3627308 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Methanosarcina barkeri str. Fusaro |
Kingdom | Archaea |
Replicon accession | NC_007355 |
Strand | - |
Start bp | 1122304 |
End bp | 1123128 |
Gene Length | 825 bp |
Protein Length | 274 aa |
Translation table | 11 |
GC content | 43% |
IMG OID | 637699817 |
Product | oligopeptide ABC transporter, permease protein |
Protein accession | YP_304481 |
Protein GI | 73668466 |
COG category | [E] Amino acid transport and metabolism [P] Inorganic ion transport and metabolism |
COG ID | [COG1173] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.00180433 |
Plasmid hitchhiking | No |
Plasmid clonability | decreased coverage |
| |
Fosmid Coverage information |
Num covering fosmid clones | 28 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCACGAGA AGAGTATTTC ACAGCGATTA AAAACTCCAA AAGGTATTGC AGGCCTTATA ATTCTAGTCT TTTTTATTTT TATGGCTGCT ACTGCATCTC TTCTGGCTCC TTATGGGCCT ACTGATTTAT CAAGTCAGCC TTTGCTCCCT CCAGATGATG CTCACCCACT TGGTACAGAT GACGTGGGAA AAGACATATT CACAGAGCTT TTGTATGGCT CAAGGACTTC ACTTACAGTT GCTTTTGTTG TATCGTTTGG AGTGCTGGTA ATCGGTACTT TTATAGGAGT ATTTTCAGGA TATATGGGCG GAATCTCTGA TAGGGTACTT ATGAGAGGAG TTGATATTTT TCTCATGATC CCTGAACTTC CTCTCATTCT CATTCTTGCA GCATACTTGC GCCCAAGCAT ATGGAATATT ATATTCATTC TTATACTCTT AGGCTGGCCT GTAGGTGCAA GGGTTACAAG GGCTCAGACT CGGACTCTCA GGGTATCTGG ACATGTAGAT TTCGCAAGGG TTTCCGGGGC TACAGCCCCT TATGTAATCA GGAAACATAT TGTTCCAGAT TTATACCCAA TCGTGGTCAC TACATTAGTA ATGCAGTCTA TCCGTGCTAT TTTGTCAGAG TCAGGCCTTG CTTTTCTGGG ACTTGGAGAC CCTTCTTATC CAAGCTGGGG GAGCATGATA AAATATGCAA TATCATATCC AATGATATTT TTCTCAGATG CATGGATGTG GTGGCTGCTG CCTGCAGGGA CATGTATAAC ACTGCTTGTG CTGGGATTCG TACTTCTGGG ACAGTCTCTG GAAGGTGATT ATTGA
|
Protein sequence | MHEKSISQRL KTPKGIAGLI ILVFFIFMAA TASLLAPYGP TDLSSQPLLP PDDAHPLGTD DVGKDIFTEL LYGSRTSLTV AFVVSFGVLV IGTFIGVFSG YMGGISDRVL MRGVDIFLMI PELPLILILA AYLRPSIWNI IFILILLGWP VGARVTRAQT RTLRVSGHVD FARVSGATAP YVIRKHIVPD LYPIVVTTLV MQSIRAILSE SGLAFLGLGD PSYPSWGSMI KYAISYPMIF FSDAWMWWLL PAGTCITLLV LGFVLLGQSL EGDY
|
| |