| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A0469 |
|---|
| Symbol | |
|---|
| ID | 3624211 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | + |
|---|
| Start bp | 564692 |
|---|
| End bp | 565621 |
|---|
| Gene Length | 930 bp |
|---|
| Protein Length | 309 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 40% |
|---|
| IMG OID | 637699362 |
|---|
| Product | nickel ABC transporter, permease protein |
|---|
| Protein accession | YP_304031 |
|---|
| Protein GI | 73668016 |
|---|
| COG category | [E] Amino acid transport and metabolism
[P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0601] ABC-type dipeptide/oligopeptide/nickel transport systems, permease components |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 36 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTAAAG GCATAGGAGA ACGGTTATTC ACATTGATTC CAGTACTGCT GGCTATTTCA
TTAATAACCT TCATCCTCGG CAGCATGTCA TCAGGTGACA CGGCACGTAC ACTAGCTGAA
AAGAAATATG ACAGGCCAAC ATATGAGCAG ATTGAGGAAA TACGAACCGA AATGGGATTT
GACAGACCGG TGCTCGTCCA ATACGCCAGT TGGCTTAAAG ATGCGGTGAA GGGTAATTTG
GGCTTTTCTT ATTCAAATGA CAGGCCGGTG GTTGATGAGA TCGTTCAATA TTTTCCTAAA
ACATTACAGT TGGCCCTTCT AGCACTATTG TTTTTAATTA TAATTTCATT TACTCTTGGA
ATTTTATCGG CAGTGTTTTC CGGCTCGTGG ATCGACAAGA TTTCCAGAAT ATACTGTTTT
TGGAGTGTAT CAATGCCTGA ATTCTGGTTT GGACTCATTC TACTGTATAT TTTCGGTGCT
CGTCTTGGAC TAATATCAGT GCTTGGTGGA AGTTCAATGA AATTTCCAAT AATACCTGCT
CTTACAATGT CTATATGCAG CGGTGGGATT TATGTCCGAC TTATTCGCAC AAATATGGAG
GAAGTACTGA ACAAAGGATA TATCCGTGCA GCCAGAGCAA AAGGCGTCAG CGAATATAAA
ATAATAACAA AACATGCTCT AAAAAACGCA ACGCTTCCTG TACTTAACAA GCTTGGGATC
GGATTTGGAT CTTTGTTAGC TGGATCTGCA ATTATTGAAT CAATATTTTC ATGGAATGGG
CTTGGAAATC TGGCTCTCGA ATCTGTTAAA CTCAAAGACT ATCCAGTAGT CCAGGGATAT
GTGCTGTTTA TGGCTGTTTT GATGGTGTTA ATTAACCTGG CTGTAGATAT TGTCTGCAGC
ATCATTGATC CGCGTCTTAG AAATGAATGA
|
|---|
| Protein sequence | MLKGIGERLF TLIPVLLAIS LITFILGSMS SGDTARTLAE KKYDRPTYEQ IEEIRTEMGF
DRPVLVQYAS WLKDAVKGNL GFSYSNDRPV VDEIVQYFPK TLQLALLALL FLIIISFTLG
ILSAVFSGSW IDKISRIYCF WSVSMPEFWF GLILLYIFGA RLGLISVLGG SSMKFPIIPA
LTMSICSGGI YVRLIRTNME EVLNKGYIRA ARAKGVSEYK IITKHALKNA TLPVLNKLGI
GFGSLLAGSA IIESIFSWNG LGNLALESVK LKDYPVVQGY VLFMAVLMVL INLAVDIVCS
IIDPRLRNE
|
|---|
| |