| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A0193 |
|---|
| Symbol | |
|---|
| ID | 3625428 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Methanosarcina barkeri str. Fusaro |
|---|
| Kingdom | Archaea |
|---|
| Replicon accession | NC_007355 |
|---|
| Strand | - |
|---|
| Start bp | 225819 |
|---|
| End bp | 227732 |
|---|
| Gene Length | 1914 bp |
|---|
| Protein Length | 637 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 46% |
|---|
| IMG OID | 637699084 |
|---|
| Product | cleavage and polyadenylation specificity factor |
|---|
| Protein accession | YP_303757 |
|---|
| Protein GI | 73667742 |
|---|
| COG category | [R] General function prediction only |
|---|
| COG ID | [COG1782] Predicted metal-dependent RNase, consists of a metallo-beta-lactamase domain and an RNA-binding KH domain |
|---|
| TIGRFAM ID | [TIGR03675] arCOG00543 universal archaeal KH-domain/beta-lactamase-domain protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.209182 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 29 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCTATTG AAGATGTGCT ATTAGACCTC AAACATAAAA TTGAGAAAAA TCTACCCGCG
GGAGTTACAA TCACCGACGT GGAATTTGAA GGTCCTCAGC TTGTTCTATA TACTGAAGAG
CCCCGCAAAT TCGCGGACGA CGGGAACATT ATTCGCAACC TCGCAAAAGA ACTCAGAACG
CGGATTGCCA TGCGCCCTGA TCCCAGGGTA CTTGCAACTG CTGAAGACTC TATTTCTATA
ATCGAAGAAG TTGTTCCAAA AGAATCCGTA ATCTCAAGCT ATTATTTTGA CCCAGATTCC
GGAGAAGTAA TTATTGAAGC TGAAAAGCCT GGTCTTGTGA TAGGAAAGCA CGGAGCAACC
CTCCGTGAGA TCACAAAGCA GATTGGCTGG ATTCCAAAGG TTGTGCGGAC TCCCCCTATC
AAATCCCGTA CAGTAAAGAA TGTAAGGGAA TTTATGAGAA ACAACCTCAA GGAAAGAAAA
GAGATTCTTA AATCAGTGGG GAGGAAGATT CACAAAGAGT GTACCTCTAA AGATCAGTGG
GTAAGGGTTA CATCACTTGG GGGCTGCAAA GAAGTGGGGA GGAGTTGTTT CCTGCTCTCT
ACTCCTGAGT CCCGAATCCT GATCGACTGC GGAGTCAATG TAGGTTCGGA CGAAAACATG
ACTCCTTACC TGTATGTTCC TGAAGTTTTT CCGTTAAACC AGATCGATGC CGTGATAGTT
ACTCACGCCC ACCTGGATCA TCAGGGGCTT GTTCCTTTGC TTTTCAAATT CGGATATGAA
GGGCCTGTCT ACTGTACGCC CCCTACGCGG GATTTGATGG TGCTGCTCCA GCTTGACTAC
ATCGACGTGG CAGCAAAAGA AGGGAAAAAG ATTCCCTATG AGTCAGGCAT GGTAGCAAAG
ACTCTCAAAC ACACAATTCC GCTGGACTAC GAGGAAGTAA CGGATATCGC TCCTGATATC
AAACTGACTT TCCATAATGC AGGCCATATT CTGGGGTCAG CTATTTCTCA TTTCCATATT
GGAGACGGGC TCCATAATGT CGTCTTTACG GGAGACTACA AATATGAGAA GACGCGGCTT
TTTGATCCTG CTGTCAATAA GTTTCCGAGA GTCGAAACTG TTGTCAGTGA AGCTACTTAT
GGAAATTCCA ATGCTTTCCA GCCCTCACTT AAGGACGCCG AAAGGCACCT GCAGATGGTA
GTTAAGAACA CTGTGGAAAG GGGAGGAATT TGTATCATCC CGGCTTTTGC AGTAGGTCGA
AGCCAGGAAG TTATGATAGT GCTTGAAGAA TCTATAAGAA AAGGGCTGAT TCCTGAAGTT
CCGGTCTATC TGGACGGAAT GATCTGGGAA GCAACGGCAA TTCATGCTAC ACATCCCGAG
TACCTGAATA ATGATCTGAG GAAACTGATC TTCCAGAAAG GCCAGAACCC CTTCCTGTCC
GAATGCTTCA AGCCTGTTGA TTCCCACGAC ATGCGCCAGA AGATAATTCA GAACCCTCAC
CCCTGTGTAA TCATCTCGAC ATCAGGCATG ATGAACGGAG GGCCGGTTAT GGAGTATTTC
AAGGCCTTTG CCGACGAACC ACGCAATTCT CTGGTGTTTG TAGGGTACCA GGCCGATGGA
ACAATCGGAC GTAGAATCCA GAAAGGATGG AAAGAAATTC CGATGACAGG AAAGGGTGGA
AGCACTGAAA TCCTGAAGTT AAACATGGAA GTTCAGGTAG TTGACGGTTT CTCAGGTCAC
TCCGATAGGA GACAGCTTAT GGATTACATC AAGAGGATGC AGCCTCGTCC GGAAAGAGTA
TTTACTGAGC ATGGGGACGA AAAAGCTTGT GTTGACCTGG CAAGTTCAAT TTATAAGAAA
CTGAAAATTG AAACCAGGGC GCTTACAAAC CTTGAAACCG TAAGGTTACT GTGA
|
|---|
| Protein sequence | MPIEDVLLDL KHKIEKNLPA GVTITDVEFE GPQLVLYTEE PRKFADDGNI IRNLAKELRT
RIAMRPDPRV LATAEDSISI IEEVVPKESV ISSYYFDPDS GEVIIEAEKP GLVIGKHGAT
LREITKQIGW IPKVVRTPPI KSRTVKNVRE FMRNNLKERK EILKSVGRKI HKECTSKDQW
VRVTSLGGCK EVGRSCFLLS TPESRILIDC GVNVGSDENM TPYLYVPEVF PLNQIDAVIV
THAHLDHQGL VPLLFKFGYE GPVYCTPPTR DLMVLLQLDY IDVAAKEGKK IPYESGMVAK
TLKHTIPLDY EEVTDIAPDI KLTFHNAGHI LGSAISHFHI GDGLHNVVFT GDYKYEKTRL
FDPAVNKFPR VETVVSEATY GNSNAFQPSL KDAERHLQMV VKNTVERGGI CIIPAFAVGR
SQEVMIVLEE SIRKGLIPEV PVYLDGMIWE ATAIHATHPE YLNNDLRKLI FQKGQNPFLS
ECFKPVDSHD MRQKIIQNPH PCVIISTSGM MNGGPVMEYF KAFADEPRNS LVFVGYQADG
TIGRRIQKGW KEIPMTGKGG STEILKLNME VQVVDGFSGH SDRRQLMDYI KRMQPRPERV
FTEHGDEKAC VDLASSIYKK LKIETRALTN LETVRLL
|
|---|
| |