| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Mbar_A0082 |
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| Symbol | |
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| ID | 3627577 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Methanosarcina barkeri str. Fusaro |
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| Kingdom | Archaea |
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| Replicon accession | NC_007355 |
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| Strand | - |
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| Start bp | 100178 |
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| End bp | 101194 |
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| Gene Length | 1017 bp |
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| Protein Length | 338 aa |
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| Translation table | 11 |
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| GC content | 48% |
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| IMG OID | 637698972 |
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| Product | H/ACA RNA-protein complex component Cbf5p |
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| Protein accession | YP_303649 |
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| Protein GI | 73667634 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0130] Pseudouridine synthase |
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| TIGRFAM ID | [TIGR00425] rRNA pseudouridine synthase, putative
[TIGR00431] tRNA pseudouridine 55 synthase
[TIGR00451] uncharacterized domain 2 |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.576501 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 26 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCACCTG CTGGCAAATT GCCGTCCGAA GCTGAAAGAA TTCTGGTCCG GAAATCCGGT
GCCTGGACAA ACCCCTCTTA CGGTTCTTAC CCGGAAAAGC GTCCTATTCT TGAATATATT
GAGAAAGGGG TTGTAAATAT TGATAAACCA AAGGGGCCGA CAAGTCACGA GGTTGCAGCC
TGGGTAAAAG CTATTCTGGG CGTGAGTACG GCAGGGCATG CAGGCTCACT TGATCCCAAG
GTTACAGGGC TTTTGCCCAC TTTACTCGGA AAGGCTACAA AGGCAGTCCC TGCTCTGCGC
CTTTCTGGAA AGGAATATGT CTGCCTTCTG AAGCTTCATA AGGAAATGCC TCAAAAACTG
GTCAGGAAGG TCTGTGAGGA ATTTACAGGC CCTATCTACC AGATGCCTCC TATCAAATCA
GCTGTCAAAC GCGTTATCAG GATAAGGACG ATCTATTACC TTGAAGTGCT TGAAATTGAA
GGGAGTTTTG TGCTCTTTCG CGTGGGATGC GAAGCCGGGA CTTACATCAG AAAACTCTGT
CACGATATTG GACTTGCTCT TGGTTGCGGC GGACATATGC AGGAACTCAG GAGGACAAAA
GCAGGCCCGT TTACCGAGGA AACACTTGTC ACCCTCCAGG ATCTCAAAGA TGCATATGTA
CTCTGGAAGG AAGACGGGGA TGAGTCTGAA ATCCGGCGTG TAATCATGCC AATGGAAACG
GCTGTATCTC ACCTTCCCAA GATTATCCTG CGGGACAGTG CAGTAGATGC AATCTGTTCA
GGGGCTGCTC TGGCAGTTCC GGGCATAACA AGCCTGGATG CGAACCTTAA GAAAGGAGAG
CTTATAGCGT TGTTTACCCT TAAAGGTGAG CTCGTTGCCC TTGCAAAAGC TGAAATGAGT
ACAGAAGAGC TCCTCAAAGC TTCAACCGGA CTTGCAGCTA CCTCAGTCCG AATTATGATG
GAGATAGGAA CCTATCCAAA GGGTTGGACT AAAAAAGAGT ATGGTGTTGA ATCCTAA
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| Protein sequence | MSPAGKLPSE AERILVRKSG AWTNPSYGSY PEKRPILEYI EKGVVNIDKP KGPTSHEVAA
WVKAILGVST AGHAGSLDPK VTGLLPTLLG KATKAVPALR LSGKEYVCLL KLHKEMPQKL
VRKVCEEFTG PIYQMPPIKS AVKRVIRIRT IYYLEVLEIE GSFVLFRVGC EAGTYIRKLC
HDIGLALGCG GHMQELRRTK AGPFTEETLV TLQDLKDAYV LWKEDGDESE IRRVIMPMET
AVSHLPKIIL RDSAVDAICS GAALAVPGIT SLDANLKKGE LIALFTLKGE LVALAKAEMS
TEELLKASTG LAATSVRIMM EIGTYPKGWT KKEYGVES
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