Gene Mbar_A0034 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagMbar_A0034 
Symbol 
ID3627293 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameMethanosarcina barkeri str. Fusaro 
KingdomArchaea 
Replicon accessionNC_007355 
Strand
Start bp41341 
End bp42462 
Gene Length1122 bp 
Protein Length373 aa 
Translation table11 
GC content42% 
IMG OID637698925 
ProductGDP-mannose 4,6 dehydratase 
Protein accessionYP_303605 
Protein GI73667590 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG1089] GDP-D-mannose dehydratase 
TIGRFAM ID[TIGR01472] GDP-mannose 4,6-dehydratase 


Plasmid Coverage information

Num covering plasmid clones23 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones11 
Fosmid unclonability p-value0.0188537 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
TTGTCCAAAG TTGCATTAAT AACTGGAATT ACAGGTCAGG ATGGCGCTTA TCTTGCCGAA 
TTATTACTCG AAAAGGGATA CATTGTGCAT GGAATCAAGC GGCGATCTTC TTCTTTTAAC
ACGGCAAGAA TTGATCATCT TTACAAAGAC CCCCATGAGA GAAATGTTAA TTTTTTCATG
CACTATGGGG ATTTGACAGA TTCTACCAAT CTGATCCGCA TAATCCAGGA AGTTCAGCCT
GATGAAATAT ACAATCTTGC AGCCCAGAGC CACGTTCAGG TATCTTTTGA GACTCCAGAG
TATACGGCAA ATTCTGATGC TATAGGAACT CTCAGACTAC TAGAGGCTAT CCGCATCCTG
GGTTTTGAAA AGAAAACAAG ATTTTACCAG GCTTCTACCA GTGAACTCTA TGGGAAAGTC
CAGGAGGTCC CCCAGAAAGA AACTACTCCT TTTTACCCAA GAAGCCCGTA TGCCGCAGCC
AAACTGTACG CATACTGGAT TACAGTCAAC TACCGGGAAG CCTATGGTAT TTTTGCATGT
AATGGAATCC TTTTCAACCA TGAATCTCCA ATCCGTGGTG AGACTTTTGT GACAAGAAAA
ATCACAATGG CGGCTACAAG GATAAAATAC GGCATGCAGG ATAGGCTTTA CCTTGGAAAC
CTTGATTCAA AAAGAGACTG GGGTTTTGCA AAAGACTATG TAGAAGCCAT GTGGCTGATG
CTCCAGCAAG AAGAGCCCGA CGATTACGTT ATAGCAACGG GCGAAACTCA CTCAGTCCGA
GAATTTATTG AACTTGTGTT TAAAGAACTC GGAATCGATA TAATCTGGCA GGGAAAAGGA
GAAGAAGAAG TCGGAATCGA TGCCCTTACA AATAAAATCT TAGTTGAAGT AGATCCTGAG
TATTATAGAC CCACTGAAGT AGAAATGTTG ATTGGCGATT CATCAAAAGC CAGAAGAAAA
CTTGGCTGGC AACCAAAAGT CAGACTGGAA GAACTGGTAA AGATGATGGT AAAGTCCGAT
GAAGAAGAAG TCCTGAAAAG TTATCCTGCA GAGAAATTAG CTTCCAGTCA GGAAACTGAG
GAAGAGTCAA TAAAATCAGA ATTAGATATC AGGAGTTTGT AA
 
Protein sequence
MSKVALITGI TGQDGAYLAE LLLEKGYIVH GIKRRSSSFN TARIDHLYKD PHERNVNFFM 
HYGDLTDSTN LIRIIQEVQP DEIYNLAAQS HVQVSFETPE YTANSDAIGT LRLLEAIRIL
GFEKKTRFYQ ASTSELYGKV QEVPQKETTP FYPRSPYAAA KLYAYWITVN YREAYGIFAC
NGILFNHESP IRGETFVTRK ITMAATRIKY GMQDRLYLGN LDSKRDWGFA KDYVEAMWLM
LQQEEPDDYV IATGETHSVR EFIELVFKEL GIDIIWQGKG EEEVGIDALT NKILVEVDPE
YYRPTEVEML IGDSSKARRK LGWQPKVRLE ELVKMMVKSD EEEVLKSYPA EKLASSQETE
EESIKSELDI RSL