| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Reut_B4424 |
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| Symbol | ligD |
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| ID | 3614286 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia eutropha JMP134 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007348 |
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| Strand | - |
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| Start bp | 1082413 |
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| End bp | 1084890 |
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| Gene Length | 2478 bp |
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| Protein Length | 825 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 637693854 |
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| Product | ATP-dependent DNA ligase |
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| Protein accession | YP_298619 |
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| Protein GI | 161611271 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG1793] ATP-dependent DNA ligase
[COG3285] Predicted eukaryotic-type DNA primase |
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| TIGRFAM ID | [TIGR02776] DNA ligase D
[TIGR02777] DNA ligase D, 3'-phosphoesterase domain
[TIGR02778] DNA polymerase LigD, polymerase domain
[TIGR02779] DNA polymerase LigD, ligase domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 6 |
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| Plasmid unclonability p-value | 0.0379748 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGCACGAA CTTCCCTTGA CCGATACCGC GAAAAACGTG ATTTCCGCGT CACGGCCGAA
CCGGGCCCGC GCACCCGTGC CCCCCGCGCC CCGGGGCCGC TGCGCTTTGT CGTGCAGAAA
CACTGGGCGC GACGCCTGCA TTACGACTTC CGGCTCGAAC TCGATGGCGT GTTGCTCAGC
TGGGCCGTTC CCAAGGGACC CAGCTTCGAT CCGGCCGAGA AGCGCATCGC CATCCACGTG
GAAGACCATC CCGTCGATTA CGCGGCGTTC GAAGGCACCA TCCCGCCGAA GCAGTATGGG
GCGGGGTCCG TCATTGTGTG GGACAACGGC ACGTGGGAGC CGGTGGGCGA CGCGCAGGCC
GGCATGGCGA AAGGCAAGCT CGAATTCGCT TTGCACGGGC AGAAGCTCGC CGGCCGCTGG
GAACTGGTGC GTATCTCGAA GCCGGGCGAT GCCGATGACC AGTGGATGTT GTTCAAGAAG
CGGGACCGGT GGGCGCGGCC GCATGCGGAG TTCGACGTCA TTACGGCGTT GCCGGACAGC
GTCGTCGCGC ATCCACTCGG GCAGGTCGAG GAACGCGAGA GCAGCAGTGC ATCGCCGTCT
GGTACCCCGG ACTTGTCGGC CGCGGTACGG GCACCGCCGC CGCCGCGCCT GGCTCCGCAA
CTGGCGACAC CGACCGCAAA ACTGCCCAGT GGTAGCGGCT GGATCATCGA GACCAAGTTC
GACGGATATC GGCTCCTGTC CCGGATCGTC GATGCCAGGG TGCACCTGAT CACGCGCAAC
GGCCACGACT GGACGCGCAA GCTCGGCGGT CTCGCCAAGG AAGTCGAGAA GCTGGATATC
TCGGAAGGAT GGCTCGACGG TGAGATCGTG GTGCTGCGCG ACGGCCTGCC CGACTTCAAT
GCGCTGCAGA ACGCCATCGA CAGCCACCGC ACCGAATCGA TTGTCTACTT CCTTTTCGAC
ATTCCGTACT GGGAAGGACG CGACCTGCGC CGCGTGCCAT TGCGGGAACG TCGGGCGCAT
CTGGCGCGCC TGGTCGATGC CCGCTCCGAA CGCGTGCGCT TCAGCGAAAG TTTCGAGGCG
CCGGCGGATC AGGTCTTTCA GGCCGCGTCC CAGTTGGGGC TGGAGGGCGT GATGCTGAAA
CGGGCGGACT CCGCCTACAG CTCTTCGCGC AATGCCGACT GGCTCAAGGC CAAATGCCGG
CTGCGCCAGG AGTTCGTGAT CTGTGGCTAT GGAGACAGGG AAGGTGCGCC CGGCGAAGTC
GGCCGCCTGA TGCTCGGCGT CTATGAGGAC GGGCAACTGC GCGATGCCGG CAACGTCGGC
ACGGGATGGG ACAGCAAGAC CGCCGCCGCG TTGCGGACGC AGCTCGCAAA GCTGAAGACC
GATACGGCGC CGTTTGCCGC TGCCTCGAAG GGCCGCAGCA GGTGGGGATC GAACAGGAAC
AGTACGCCGC ATTGGGTCAA GCCGTCGCTG GTGGCGGAGG TCGAGTTCGC CGAGTGGACG
CCGGCGGGCC AGGTACGCCA GGCATCGTTC AAGGCGCTGC GCAGCGAAAC GCCGGCGCGG
GATGTCCGCA GGGAAGCGGT GCAGGTCGAG CCGGGTTCCA CGCGCGCCGC CGTGAAAGTG
ACGCACCCTG AGCGAGTCAT TGATGCCACC ACCGGCATCA CCAAGCTCGA CCTCGTGCGC
TACTACGAGA GCGTGGCAGA CTGGCTGCTG CCGCATCTCA TGGCGCGGCC CGTGGCGCTG
CTGCGCGCGC CCGATGGCAT CGGCGGCGAG CTCTTCTTTC AGAAGCACGC TGAAACCACG
AAGCTGCCGG GGCTGACCGA GCAGCCTGCG TCCCTGTGGC CAGGGCATAG CCGCCTGCTG
ACGATCGACT CGGCCGAAGC GCTCGCCGGC GCCGCGCAAC TGAATGTGGT CGAACTCCAC
ACATGGAACT CCACGGCGGC CGATCTCGCC CACCCGGATC GCGTCATCTT CGATCTGGAC
CCTGGGGAGG GCGTGTCCTG GCAGCATGTA CAGGAGGCAG CGATCCTGGT GCACACGCTA
CTGGGGGAGC TGGGGCTTGC AGCGTGGCTC AAGACCAGCG GCGGAAAAGG GCTGCACGTC
GTCGTGCCAT TGGTGCCGGA ACTCGACTAT GACGCGGTAA AGTCCTTTTC CCGCGCCGCC
GTGCTGCACC TGGCCAAGAC CCTGCCTCAG CGCTTCGTGG CCAGGTCCGG CGCAGGCAAT
CGCAAGGGTA GGGTGTTTGT CGACTACTTG CGCAACGGCA CCGGGCAGAC CACCGCCGCA
GCATTCTCGG CGCGTGCGCG ACCCGGCATG GGTGTGTCGA TGCCACTATC ATGGGAGCAA
CTGCCGCAGC TCAAAAGCGC CGACCAGTGG ACGGTCCGGA ACGCCAGGGA ATACCTGAGC
TTCCGGACGA ATGATCCATG GAGTGACTAC TGGTCGACGA CGCAAAGCCT TCAAGATGCC
ATGGAGGCAC TCGGCTGA
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| Protein sequence | MARTSLDRYR EKRDFRVTAE PGPRTRAPRA PGPLRFVVQK HWARRLHYDF RLELDGVLLS
WAVPKGPSFD PAEKRIAIHV EDHPVDYAAF EGTIPPKQYG AGSVIVWDNG TWEPVGDAQA
GMAKGKLEFA LHGQKLAGRW ELVRISKPGD ADDQWMLFKK RDRWARPHAE FDVITALPDS
VVAHPLGQVE ERESSSASPS GTPDLSAAVR APPPPRLAPQ LATPTAKLPS GSGWIIETKF
DGYRLLSRIV DARVHLITRN GHDWTRKLGG LAKEVEKLDI SEGWLDGEIV VLRDGLPDFN
ALQNAIDSHR TESIVYFLFD IPYWEGRDLR RVPLRERRAH LARLVDARSE RVRFSESFEA
PADQVFQAAS QLGLEGVMLK RADSAYSSSR NADWLKAKCR LRQEFVICGY GDREGAPGEV
GRLMLGVYED GQLRDAGNVG TGWDSKTAAA LRTQLAKLKT DTAPFAAASK GRSRWGSNRN
STPHWVKPSL VAEVEFAEWT PAGQVRQASF KALRSETPAR DVRREAVQVE PGSTRAAVKV
THPERVIDAT TGITKLDLVR YYESVADWLL PHLMARPVAL LRAPDGIGGE LFFQKHAETT
KLPGLTEQPA SLWPGHSRLL TIDSAEALAG AAQLNVVELH TWNSTAADLA HPDRVIFDLD
PGEGVSWQHV QEAAILVHTL LGELGLAAWL KTSGGKGLHV VVPLVPELDY DAVKSFSRAA
VLHLAKTLPQ RFVARSGAGN RKGRVFVDYL RNGTGQTTAA AFSARARPGM GVSMPLSWEQ
LPQLKSADQW TVRNAREYLS FRTNDPWSDY WSTTQSLQDA MEALG
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