| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | Reut_B4088 |
|---|
| Symbol | |
|---|
| ID | 3613501 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia eutropha JMP134 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_007348 |
|---|
| Strand | - |
|---|
| Start bp | 728884 |
|---|
| End bp | 730353 |
|---|
| Gene Length | 1470 bp |
|---|
| Protein Length | 489 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637693523 |
|---|
| Product | RND efflux system, outer membrane lipoprotein, NodT |
|---|
| Protein accession | YP_298288 |
|---|
| Protein GI | 73537921 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 18 |
|---|
| Plasmid unclonability p-value | 0.947344 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | n/a |
|---|
| Fosmid unclonability p-value | n/a |
|---|
| Fosmid Hitchhiker | n/a |
|---|
| Fosmid clonability | n/a |
|---|
| |
Sequence |
| Gene sequence | ATGAAGAAGA CTTTGACCTG TGCTGCCGCC GTCGCCCTGC TGGCCGGCTG CAGCTTGATT
CCCTCCTATG AACAGCCGTC GCTGCCAGTG GCGCAAGCCT ACCCGCAAGG CGCCGCGTAT
CCGACTGCCG ATGCCGCCGC CGGCGCACAG CAGATGCGTG CGACCGATCT TGGCTGGCGC
GATTTCTTTG CCGACGCGCG GCTGCGCCGC CTGATCGAAG TCGCACTCGA CAACAACCGC
GACCTGCGCG TGGCGGCACT GAACGTCGAA GCATTCCGTG CGCAATACCA GATCGAACGG
GCCGACCTGT TCCCCGCGAT CGGCGTGGCC GCGCAGGAAA CGCGCCAGCG CATTCCCGCG
GACCTGTCCA CCACCGGGCG GCGCATCATC GCGAGCCAGT ATGGCGTGTC GCTCGGCACG
ACCGCATGGG AGCTTGACCT GTTCGGCCGT ATCCGCAGCC TCAGCGAAGC GGCACTGGAG
CAATATTTCG CAAGCGACGA AACCCGGCGC AGTGCTCAGA TCGCGCTGGT GGCCAGCGTG
GCCAACGCCT ACCTGGCACT GCTCGCCGAC GACGCGCAGC TCACGCTCAC GCGCAGTACG
CTGGCGAACT ACGAACGCAG CTATGGCCTG ACGCGCCGCA GCTACGAGGA AGGCATTGCC
TCGCGTCTGG ACCTGCGGCA GTCGCAGACC GCCGTGGAAA ACGCGCGTGC CAGCCTGGCG
CGCTACACGC GCCTGGTCGC GCAGGACGAG AATGCGCTGG TGCTGTTGCT GGGCACCGGC
ATGCCGGACG ACCTGCCGGC GCCGTTGCCG CTCGACCAGA AGCTGACGGC GGACGTGCCT
GCCGGATTGC CATCCGACCT GCTGCAGAAC CGTCCCGACG TGCTTGCAGC CGAACACCGC
CTGCGCTCGG CCAACGCCAA TATCGGCGCG GCACGCGCGG CGTTTTTCCC GCGCATCGCC
CTGACGGCTT CGGCGGGCAC GGCCAGCAAT GAACTGTCCG GCCTGTTCAA GGCCGGATCG
GGCACCTGGC TGTTCCAGCC GCAGATCAGC CTGCCGCTGT TCACGGCCGG CAGCCTGCGC
GCGAGCCTCG ACTACGCAAA GATCCAGAAG GACATCAACG TCGCGCAGTA CGAGCGCACG
ATCCAGACAG CCTTCCGCGA AGTTTCCGAC GGCCTCGCCG CGCGCGGCAC GTATACGAGC
CAACTCGAAG CGCAGGTGCG TTTTGTCGAA GCGGCGCAGG ATGCCTACAA CCTCGCAGAC
CGTCGCTACC GCACCGGCGT GGACAGCTAC CTGGCGGTGC TGGATGCGCA GCGCTCGCTG
TACAACGCCC AGCAGCTCCT GATCGTCGCA CGACAGGAAC AGCTGACCAG CGAGGTCAAT
CTCTACAAGG CCCTCGGCGG CGGCTGGCAT GACCAGACCG GCCCTGCTGC CGACACCGGC
GGCCAGCCGG CGCCCGCGCC CGCGTCCTGA
|
|---|
| Protein sequence | MKKTLTCAAA VALLAGCSLI PSYEQPSLPV AQAYPQGAAY PTADAAAGAQ QMRATDLGWR
DFFADARLRR LIEVALDNNR DLRVAALNVE AFRAQYQIER ADLFPAIGVA AQETRQRIPA
DLSTTGRRII ASQYGVSLGT TAWELDLFGR IRSLSEAALE QYFASDETRR SAQIALVASV
ANAYLALLAD DAQLTLTRST LANYERSYGL TRRSYEEGIA SRLDLRQSQT AVENARASLA
RYTRLVAQDE NALVLLLGTG MPDDLPAPLP LDQKLTADVP AGLPSDLLQN RPDVLAAEHR
LRSANANIGA ARAAFFPRIA LTASAGTASN ELSGLFKAGS GTWLFQPQIS LPLFTAGSLR
ASLDYAKIQK DINVAQYERT IQTAFREVSD GLAARGTYTS QLEAQVRFVE AAQDAYNLAD
RRYRTGVDSY LAVLDAQRSL YNAQQLLIVA RQEQLTSEVN LYKALGGGWH DQTGPAADTG
GQPAPAPAS
|
|---|
| |