| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | PMN2A_0282 |
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| Symbol | secD |
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| ID | 3605654 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Prochlorococcus marinus str. NATL2A |
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| Kingdom | Bacteria |
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| Replicon accession | NC_007335 |
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| Strand | + |
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| Start bp | 823015 |
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| End bp | 824505 |
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| Gene Length | 1491 bp |
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| Protein Length | 496 aa |
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| Translation table | 11 |
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| GC content | 34% |
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| IMG OID | 637687140 |
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| Product | preprotein translocase subunit SecD |
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| Protein accession | YP_291477 |
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| Protein GI | 72382122 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG0342] Preprotein translocase subunit SecD |
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| TIGRFAM ID | [TIGR00916] protein-export membrane protein, SecD/SecF family
[TIGR01129] protein-export membrane protein SecD |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 0.621699 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | n/a |
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| Fosmid unclonability p-value | n/a |
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| Fosmid Hitchhiker | n/a |
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| Fosmid clonability | n/a |
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Sequence |
| Gene sequence | ATGGGCAGAA AGAATTACTG GTTTCTTTTC GTTATCCTTT TTGCAATATT TAGTATTTTT
ATATGTACAA ATATTCCTTT TCAATTAGGA TTGGATTTAA GAGGAGGTAG TCAACTAACT
CTAGAGGTTC AGCCTACTAA GGAAATTACA AAAATTACTC CTAACGAAAT AGAAGGAGTT
AAGGCTGTTC TTGACAAGAG GGTAAACGGA TTGGGAGTTT CAGATTCTCA ACTTCAAACT
GTAGGAACAA ATCAATTGTT ATTAGAACTG CCCGGCGAGC AAGATCCTTC TGGGGCAGCG
AAAGTATTAG GAGAAACTGC TCTATTAGAA TTCAGAATTC AGAAAAATGG TACAGCGGCT
CAATTAAGAG ATCTACAAAC TCAACGAAAT AGTGTTGAAT CTATAATTAG CTTATTAGAA
GAGAATAATA ATTCAGCTCA GTTACTAAAG GAGATCAATA TTAACAATGA TATTAATCAG
TTATTCGAAA AATATAATAT TCAATCTGAC CAGATATTAG ATGAAGTTCA ATTTAATACT
TTAAGGAATA AAATAAGTAC TGAAATAGCA AGTCTTTTTG AACCAACATC ATTAACTGGA
CAGTATTTGA CAAATGCAGG AAGACGACAA GATCAAAATA CCAATAATTG GGAAGTCACT
TTAAGCTTCA ATAATGAGGG AGGAGAATTA TTTGCAGATC TCACAAAATC CATCGCTGGC
ACGTCTCGAT TGCTTGGAAT TGTTATTGAT GGTATCTCAT ATAGCGAAGC AAGTGTTGGT
AAGCAATTTG AAACAGCAGG TATTACTGGG GGAGCCGCGA CAATAAGCGG TAATTTTACT
GCGGATGATG CTAGAAACTT AGAAGTTCAA TTAAGGGGAG GTGCTTTACC ACTACCTATT
GAGATTGTTC AAATAAGAAC AATAGGCCCA TCTTTAGGTA CACAAAATAT TCGTTTAAGT
CTTTTTGCTG CTCTAACAGG CTTATTTTTC GTAGGTATTT TTATGATCTT TATCTATAAA
CTTGCTGGAT TTGTTGCTGT CTTGGCATTA TCTTGTTATT CGCTATTTAC TCTCTCTATT
TATGCTCTAC TCCCAGTAAC TCTTACTCTT CCAGGTATAG CTGGATTTAT ATTAAGTATA
GGAATGGCGG TTGACGCTAA TGTTCTTATT TTTGAAAGAT TAAAGGAAGA ACTACTTAAT
GGAAATACAC TGATTCGGTC AATAGATGCA AGTTTTAAAA ACGCTTTTTC ATCAATAATT
GATGGTCATT TAACAACTTT AATAAGCTGT ATTACGTTAT TCTATTTGGG AACTGGATTT
GTAAAAGGTT TCGCAGCAAC CTTAGGTATA GGGGTTATGT TGAGCTTATT TACTGCCTTA
ACATGTACAA AAGCAATTTT GAAGTTCTTG ATGAGTTTTC AAGGTCTTCG AAAAATCTCT
AACTTTATTA ACGTTAATCA GATTCCATCA CCATCTATCA ACGTCCAATA A
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| Protein sequence | MGRKNYWFLF VILFAIFSIF ICTNIPFQLG LDLRGGSQLT LEVQPTKEIT KITPNEIEGV
KAVLDKRVNG LGVSDSQLQT VGTNQLLLEL PGEQDPSGAA KVLGETALLE FRIQKNGTAA
QLRDLQTQRN SVESIISLLE ENNNSAQLLK EININNDINQ LFEKYNIQSD QILDEVQFNT
LRNKISTEIA SLFEPTSLTG QYLTNAGRRQ DQNTNNWEVT LSFNNEGGEL FADLTKSIAG
TSRLLGIVID GISYSEASVG KQFETAGITG GAATISGNFT ADDARNLEVQ LRGGALPLPI
EIVQIRTIGP SLGTQNIRLS LFAALTGLFF VGIFMIFIYK LAGFVAVLAL SCYSLFTLSI
YALLPVTLTL PGIAGFILSI GMAVDANVLI FERLKEELLN GNTLIRSIDA SFKNAFSSII
DGHLTTLISC ITLFYLGTGF VKGFAATLGI GVMLSLFTAL TCTKAILKFL MSFQGLRKIS
NFINVNQIPS PSINVQ
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